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hypothetical_protein_pdul_cds_413

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_413__YP_008319130__Pandoravirus_dulcis__1349409

Identity

Accession:: YP_008319130 ↗
Protein ID:: hypothetical_protein_pdul_cds_413
Kingdom:: euk

Quality

64.7 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 134-224

PDB

Domain cluster: rep: MW452941.1__QRV71437.1__MEP301_gp09__00009__D1-77

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19161.6 best	DUF5843	164.7	2.50e-48	97.8%	44.9%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2xqoA00	1.10.530.60	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.63	50.0	3.86e-01	85.7%	69.5%
2nsaA00	1.10.3120.10	Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain	0.60	52.0	4.25e-01	96.7%	89.8%
7zs9F01	3.90.940.10	Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RNA polymerase subunit, RPB6/omega	0.59	42.0	4.10e-01	74.7%	77.0%
5zjgA02	1.10.246.130	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain	0.55	42.0	4.00e-01	84.6%	85.7%
2ltuA00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.54	32.0	3.84e-01	83.5%	87.1%
4f3nA00	3.40.50.12710	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.54	42.0	2.89e-01	87.9%	86.9%
1zymA02	1.10.274.10	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain	0.53	39.0	3.52e-01	76.9%	98.4%
2m6uA00	1.20.81.20	Mainly Alpha › Up-down Bundle › Receptor-associated Protein ›	0.52	38.0	3.98e-01	78.0%	98.8%
1x4oA00	1.10.10.790	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module	0.52	26.0	2.86e-01	70.3%	57.7%
3buxB01	1.20.930.20	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain	0.51	40.0	3.56e-01	83.5%	96.9%
2kg7B00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.51	31.0	3.03e-01	74.7%	56.7%
3sfvB02	6.10.140.2010	Special › Helix non-globular › Helix Hairpins ›	0.50	43.0	3.39e-01	95.6%	92.0%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3999659	103.1.1.0 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain	0.63	46.0	5.02e-01	79.1%	100.0%
3786420	102.2.1.0 ↗	alpha arrays › HhH/H2TH › H2TH › H2TH	0.59	42.0	4.06e-01	74.7%	80.0%
3481034	4009.1.1.0 ↗	alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins	0.56	41.0	4.28e-01	78.0%	93.8%
3743070	601.4.1.60 ↗	alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TMD0_ABC	0.53	42.0	3.51e-01	82.4%	71.6%
4874394	611.2.1.1 ↗	alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) › Cbl_N	0.52	40.0	3.46e-01	84.6%	72.0%
2141223	5055.1.1.1 ↗	extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › CaMBD	0.50	35.0	3.53e-01	73.6%	82.1%

D2 medium residues 225-340

PDB

Domain cluster: rep: MW452941.1__QRV71437.1__MEP301_gp09__00009__D78-159

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19161.6 best	DUF5843	198.8	9.10e-59	92.2%	54.1%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1g1cA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	28.0	3.07e-01	96.6%	58.2%
1u2hA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	27.0	2.98e-01	96.6%	60.4%
5fm5P00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	27.0	2.93e-01	96.6%	59.2%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4032612	1.1.9.45 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3427	0.59	45.0	4.12e-01	80.2%	69.9%
3837944	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.56	46.0	4.63e-01	87.1%	93.9%
3738021	304.8.1.105 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF30953	0.51	28.0	2.77e-01	70.7%	49.2%