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hypothetical_protein_pdul_cds_44

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_44__YP_008318589__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008318589 ↗
Protein ID:
hypothetical_protein_pdul_cds_44
Kingdom:
euk

Quality

70.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (23 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 92-180
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_56__YP_008436517__Pandoravirus_salinus__1349410__D71-141
D2 medium residues 235-340
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_37__YP_009481647__Pandoravirus_neocaledonia__2107708__D128-226
D3 medium residues 341-412_564-575
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dwkA00 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.53 40.0 3.34e-01 82.1% 82.6%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.53 42.0 2.83e-01 85.7% 53.8%
1hm7B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 40.0 2.86e-01 85.7% 96.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3178290 320.4.1.0 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain 0.50 40.0 3.37e-01 89.3% 62.0%
D4 medium residues 413-563
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp1026__YP_009119995__Pandoravirus_inopinatum__1605721__D192-256_273-350
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3v69B00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 31.0 3.54e-01 92.1% 79.5%
3cswC01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 30.0 3.51e-01 100.0% 83.0%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 24.0 2.85e-01 78.8% 63.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3185065 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.58 31.0 3.42e-01 92.1% 61.6%
4047137 4956.1.1.1 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.57 25.0 3.33e-01 79.5% 75.0%
3688807 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.57 30.0 3.39e-01 92.1% 65.2%
3698201 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.56 31.0 3.41e-01 95.4% 64.0%
4014955 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 32.0 3.39e-01 92.7% 64.6%
3216991 331.15.1.0 ↗ a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 0.53 25.0 3.09e-01 79.5% 70.0%
3592234 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 32.0 3.61e-01 99.3% 79.1%
3698579 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 32.0 3.67e-01 92.7% 86.4%