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hypothetical_protein_pdul_cds_528

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_528__YP_009430231__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_009430231 ↗
Protein ID:
hypothetical_protein_pdul_cds_528
Kingdom:
euk

Quality

58.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-148
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.75 37.0 4.18e-01 90.6% 60.6%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 32.0 4.90e-01 97.1% 100.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 31.0 4.47e-01 100.0% 84.4%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 33.0 3.86e-01 91.3% 58.4%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.72 36.0 4.98e-01 98.6% 98.5%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.72 33.0 4.63e-01 98.6% 88.4%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.72 33.0 4.81e-01 88.4% 100.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 31.0 4.60e-01 86.2% 98.2%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 36.0 4.88e-01 96.4% 100.0%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.68 40.0 3.44e-01 100.0% 37.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.67 34.0 4.39e-01 90.6% 85.7%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 33.0 3.31e-01 90.6% 45.4%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.66 43.0 3.89e-01 100.0% 48.1%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 33.0 4.24e-01 100.0% 81.5%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 30.0 3.96e-01 85.5% 77.6%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.65 34.0 3.35e-01 100.0% 47.0%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 32.0 4.08e-01 87.7% 84.3%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 26.0 3.90e-01 83.3% 96.6%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.59 40.0 4.15e-01 100.0% 74.8%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.58 36.0 4.13e-01 94.9% 84.0%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 26.0 3.77e-01 84.1% 92.2%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 34.0 3.91e-01 92.0% 79.4%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 37.0 3.97e-01 84.8% 78.8%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 25.0 3.31e-01 84.1% 80.9%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 36.0 3.90e-01 85.5% 81.0%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 31.0 3.76e-01 87.7% 84.4%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.53 35.0 4.12e-01 88.4% 98.9%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.53 36.0 4.16e-01 88.4% 99.0%
2opjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 27.0 3.29e-01 85.5% 81.4%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.50 34.0 3.93e-01 83.3% 100.0%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 35.0 3.85e-01 72.5% 87.0%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.50 43.0 4.01e-01 92.8% 92.9%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 35.0 4.00e-01 97.8% 99.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.83 37.0 5.61e-01 87.7% 98.3%
3553983 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.81 36.0 5.49e-01 89.1% 98.3%
3929373 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.78 35.0 5.30e-01 88.4% 100.0%
3927795 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 34.0 5.03e-01 86.2% 100.0%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.74 42.0 5.39e-01 93.5% 96.2%
3930366 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 34.0 5.00e-01 87.0% 100.0%
3414063 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.74 32.0 4.84e-01 86.2% 100.0%
3937299 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 34.0 4.10e-01 85.5% 65.6%
3368864 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 34.0 4.85e-01 87.0% 93.8%
3930643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 34.0 4.84e-01 89.9% 98.3%
3690254 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 36.0 4.45e-01 90.6% 73.3%
3662319 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.73 40.0 5.17e-01 92.0% 92.5%
3935101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 35.0 4.93e-01 92.0% 96.9%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 33.0 4.90e-01 89.1% 100.0%
3933539 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 35.0 4.89e-01 92.0% 96.9%
3268160 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 42.0 5.14e-01 100.0% 88.9%
4283343 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 40.0 5.22e-01 100.0% 96.2%
3940362 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 37.0 3.09e-01 92.8% 30.1%
3807651 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.71 42.0 4.66e-01 89.9% 73.6%
3924375 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.70 36.0 4.71e-01 98.6% 89.3%
3925589 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 37.0 5.03e-01 87.0% 100.0%
3240407 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.70 35.0 4.79e-01 98.6% 94.3%
3932484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 34.0 4.82e-01 89.9% 100.0%
4484974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 39.0 4.86e-01 99.3% 88.2%
3357709 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 38.0 4.73e-01 89.9% 85.9%
3703933 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.70 33.0 4.74e-01 97.8% 96.9%
4319097 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 31.0 4.55e-01 92.0% 98.3%
3627859 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.70 35.0 4.66e-01 98.6% 89.3%
3941170 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.69 34.0 4.65e-01 97.8% 92.9%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 39.0 4.85e-01 100.0% 89.4%
4210485 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.69 32.0 4.36e-01 87.7% 89.2%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 38.0 5.00e-01 100.0% 98.7%
3743730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 34.0 4.56e-01 100.0% 89.3%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 31.0 4.32e-01 89.1% 85.7%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 40.0 4.79e-01 92.0% 86.2%
4028731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 32.0 4.70e-01 89.1% 98.5%
3494683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 34.0 4.62e-01 93.5% 95.7%
3841414 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 33.0 4.49e-01 100.0% 92.9%
3459099 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.66 39.0 4.41e-01 92.0% 75.2%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.66 35.0 4.60e-01 89.9% 93.3%
3514556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 32.0 4.32e-01 99.3% 90.0%
3709279 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 36.0 4.39e-01 92.8% 82.2%
4988761 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.65 41.0 4.89e-01 100.0% 95.6%
4625654 4.1.1.445 ↗ beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.65 34.0 4.38e-01 90.6% 90.7%
3354076 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.64 37.0 3.82e-01 90.6% 59.2%
3672735 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.64 30.0 4.17e-01 87.7% 92.3%
3233461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 29.0 4.28e-01 84.1% 100.0%
4987744 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.63 32.0 3.27e-01 100.0% 48.9%
3494307 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.63 34.0 3.57e-01 94.2% 56.8%
3201755 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.62 36.0 3.35e-01 92.0% 45.3%
4024240 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 33.0 4.10e-01 97.1% 91.3%
3928050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 34.0 3.44e-01 97.1% 56.3%
3400906 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 36.0 4.09e-01 85.5% 81.0%
3241890 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 34.0 3.99e-01 93.5% 80.0%
3632407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 4.14e-01 92.8% 83.8%
5027789 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.55 33.0 3.76e-01 87.0% 80.0%
3697909 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.54 48.0 4.25e-01 94.9% 73.3%
3188712 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.54 36.0 4.14e-01 97.8% 95.0%
3240679 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 40.0 3.84e-01 100.0% 67.5%
3689576 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.70e-01 100.0% 64.5%
3959465 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.53 34.0 3.51e-01 87.7% 68.5%
3611892 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.52 39.0 3.47e-01 77.5% 96.3%