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hypothetical_protein_pdul_cds_574

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_574__YP_009430237__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_009430237 ↗
Protein ID:
hypothetical_protein_pdul_cds_574
Kingdom:
euk

Quality

66.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-82
PDB
Domain cluster: rep: hypothetical_protein_pqer_cds_316__YP_009483007__Pandoravirus_quercus__2107709__D21-75
D2 medium residues 84-101_125-162_187-213
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_1078__YP_009482688__Pandoravirus_neocaledonia__2107708__D193-222_251-286
D3 medium residues 214-341
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_357__YP_008437077__Pandoravirus_salinus__1349410__D224-353
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.74 27.0 4.55e-01 80.5% 100.0%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 45.0 3.26e-01 82.0% 74.8%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 44.0 3.32e-01 78.9% 51.6%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 42.0 3.46e-01 75.8% 76.2%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 45.0 3.30e-01 84.4% 78.4%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.57 39.0 4.42e-01 70.3% 95.8%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 48.0 3.54e-01 91.4% 46.8%
3k0yA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.55 26.0 3.44e-01 85.2% 84.6%
1io1A03 2.30.220.10 Mainly Beta › Roll › f41 fragment of flagellin, C-terminal domain › f41 fragment of flagellin, C-terminal domain 0.54 35.0 3.93e-01 72.7% 86.3%
2ijaA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.53 43.0 3.31e-01 85.2% 79.1%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.53 41.0 3.12e-01 82.0% 55.2%
4zovB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 3.23e-01 93.8% 38.3%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.52 45.0 3.07e-01 94.5% 51.7%
3a46A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.51 39.0 3.88e-01 81.2% 90.4%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 3.14e-01 90.6% 92.8%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 3.07e-01 87.5% 95.4%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2706250 4312.1.1.7 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › HigB_toxin 0.62 44.0 4.81e-01 72.7% 100.0%
5030390 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.61 38.0 4.48e-01 71.1% 89.9%
3589339 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.60 42.0 4.76e-01 71.1% 100.0%
2057235 4312.1.1.5 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › RelE 0.60 41.0 4.46e-01 71.1% 83.3%
3240616 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 46.0 3.35e-01 83.6% 59.7%
134040 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.57 39.0 4.42e-01 70.3% 95.8%
3246253 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 43.0 3.19e-01 81.2% 55.5%
3958160 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 40.0 4.12e-01 72.7% 85.8%
3446490 5.1.3.68 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.55 42.0 2.99e-01 80.5% 58.2%
3574500 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 49.0 3.35e-01 100.0% 95.4%
3706423 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 3.17e-01 87.5% 88.1%
5032565 4312.1.1.10 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin 0.55 35.0 4.27e-01 89.1% 98.8%
3932344 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.55 46.0 3.38e-01 90.6% 43.5%
3917376 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.55 29.0 3.75e-01 79.7% 92.9%
3804709 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.54 42.0 3.18e-01 81.2% 47.1%
3388897 5.1.4.407 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, Alsin_RLD 0.53 42.0 3.02e-01 96.9% 28.4%
3794471 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.53 46.0 3.33e-01 93.0% 40.0%
3797427 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 42.0 3.15e-01 85.2% 98.2%
None — 0.53 41.0 3.15e-01 81.2% 46.8%
3648896 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.53 41.0 3.12e-01 81.2% 45.2%
3923987 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.53 41.0 3.18e-01 82.8% 93.0%
5040209 5.1.4.87 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.53 46.0 3.25e-01 96.9% 50.9%
3323488 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 41.0 3.11e-01 81.2% 47.7%
3739833 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 31.0 3.33e-01 96.1% 65.5%
3255680 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 45.0 3.31e-01 93.8% 41.4%
2807914 4312.1.1.6 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YoeB_toxin 0.53 36.0 4.16e-01 89.8% 98.9%
3237256 5.1.4.156 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.53 44.0 3.09e-01 92.2% 64.1%
4298303 243.1.1.92 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26366 0.53 37.0 3.79e-01 71.9% 96.8%
4159908 5.1.4.42 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_4 0.52 44.0 3.31e-01 92.2% 46.3%
3342083 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 40.0 3.07e-01 81.2% 42.4%
3182913 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 41.0 2.78e-01 85.9% 87.6%
3242246 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.51 43.0 3.17e-01 91.4% 92.0%
3592992 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 40.0 3.05e-01 84.4% 68.3%
3596002 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 36.0 3.60e-01 71.9% 92.3%
3605476 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 42.0 3.03e-01 92.2% 91.8%
D4 medium residues 342-412
PDB