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hypothetical_protein_pdul_cds_577
Euk-VirPandoravirus_dulcis
hypothetical_protein_pdul_cds_577__YP_008319365__Pandoravirus_dulcis__1349409
Identity
- Accession:
- YP_008319365 ↗
- Protein ID:
- hypothetical_protein_pdul_cds_577
- Kingdom:
- euk
Quality
70.8
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-75
D2
medium
residues 76-138
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qkdA04 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.60 | 45.0 | 3.64e-01 | 82.5% | 68.5% |
| 5bp8A01 | 1.50.10.160 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.57 | 46.0 | 3.26e-01 | 100.0% | 26.6% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.57 | 48.0 | 3.87e-01 | 100.0% | 64.4% |
| 3nvoB02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.56 | 48.0 | 4.02e-01 | 100.0% | 75.9% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.55 | 38.0 | 3.28e-01 | 76.2% | 64.6% |
| 3kr9A02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 43.0 | 4.44e-01 | 95.2% | 95.1% |
| 1zoyA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.54 | 45.0 | 3.82e-01 | 100.0% | 59.0% |
| 2dt5B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 3.77e-01 | 93.7% | 67.1% |
| 3sjqC00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 37.0 | 3.51e-01 | 76.2% | 61.3% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.51 | 44.0 | 3.80e-01 | 100.0% | 75.7% |
| 5nl6B01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 42.0 | 3.58e-01 | 100.0% | 75.2% |
| 3keoA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.68e-01 | 96.8% | 72.2% |
| 4j0eA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 41.0 | 2.97e-01 | 95.2% | 42.1% |
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.50 | 40.0 | 3.58e-01 | 93.7% | 67.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3585151 | 109.4.1.913 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TBCD | 0.55 | 46.0 | 3.02e-01 | 100.0% | 20.3% |
| 4472949 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.53 | 45.0 | 4.15e-01 | 100.0% | 78.8% |
| 3293149 | 2486.1.1.11 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_2 | 0.53 | 44.0 | 2.76e-01 | 98.4% | 15.6% |
| 3504478 | 101.1.2.81 ↗ | alpha arrays › HTH › HTH › winged helix domain › Put_DNA-bind_N | 0.52 | 37.0 | 3.48e-01 | 93.7% | 57.6% |
| 4667980 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 38.0 | 3.67e-01 | 98.4% | 69.3% |
| 4594071 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.52 | 43.0 | 4.01e-01 | 100.0% | 78.8% |
| 3580283 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 41.0 | 3.90e-01 | 100.0% | 85.9% |
| 3592842 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.51 | 42.0 | 3.21e-01 | 95.2% | 64.4% |
| 4260312 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.51 | 42.0 | 3.72e-01 | 98.4% | 64.0% |
D3
medium
residues 139-197
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.64 | 44.0 | 3.50e-01 | 74.6% | 44.0% |
| 5jc3A02 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.63 | 52.0 | 4.22e-01 | 98.3% | 58.7% |
| 1zoyA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.61 | 50.0 | 4.14e-01 | 96.6% | 65.0% |
| 2atfA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 52.0 | 3.65e-01 | 98.3% | 82.3% |
| 3o10C00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.60 | 43.0 | 3.35e-01 | 78.0% | 49.3% |
| 2lahA00 | 1.25.40.430 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 49.0 | 3.77e-01 | 100.0% | 38.1% |
| 5jajA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.58 | 47.0 | 3.91e-01 | 94.9% | 48.3% |
| 3anwB00 | 1.20.58.2050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 47.0 | 3.62e-01 | 100.0% | 54.9% |
| 2uxwA01 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.57 | 43.0 | 3.09e-01 | 83.1% | 67.2% |
| 1kmiZ02 | 1.10.287.500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 38.0 | 3.07e-01 | 71.2% | 82.8% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 44.0 | 3.86e-01 | 89.8% | 53.5% |
| 1vw4H00 | 3.90.1180.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 | 0.57 | 47.0 | 3.66e-01 | 100.0% | 70.3% |
| 1w07A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.57 | 41.0 | 3.06e-01 | 79.7% | 89.9% |
| 1dosA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 49.0 | 3.04e-01 | 100.0% | 76.8% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 45.0 | 4.42e-01 | 93.2% | 98.5% |
| 2kmfA01 | 1.20.58.810 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 | 0.55 | 46.0 | 3.97e-01 | 100.0% | 69.6% |
| 4lypB00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 44.0 | 2.79e-01 | 100.0% | 21.4% |
| 2xheA03 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.55 | 41.0 | 3.33e-01 | 83.1% | 59.5% |
| 2h21A02 | 3.90.1420.10 | Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain | 0.55 | 45.0 | 3.35e-01 | 94.9% | 88.5% |
| 3k2oB02 | 1.20.1280.270 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.55 | 36.0 | 3.83e-01 | 83.1% | 91.1% |
| 2q14B01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 45.0 | 3.10e-01 | 98.3% | 70.8% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 40.0 | 3.78e-01 | 100.0% | 64.1% |
| 7kypE01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 46.0 | 3.14e-01 | 98.3% | 46.1% |
| 3eujB00 | 1.10.225.40 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › MukF, C-terminal domain | 0.53 | 42.0 | 3.80e-01 | 93.2% | 91.1% |
| 3sqiA01 | 1.10.150.540 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.53 | 44.0 | 3.84e-01 | 100.0% | 89.9% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.53 | 38.0 | 3.40e-01 | 76.3% | 83.7% |
| 6fdfA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 44.0 | 3.18e-01 | 100.0% | 64.6% |
| 6vddA02 | 1.20.1060.10 | Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 | 0.52 | 36.0 | 2.98e-01 | 74.6% | 90.4% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.52 | 36.0 | 3.46e-01 | 76.3% | 96.0% |
| 3e0lA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.52 | 42.0 | 2.72e-01 | 100.0% | 18.4% |
| 4c0aA02 | 1.10.1000.11 | Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 | 0.51 | 42.0 | 3.46e-01 | 96.6% | 52.5% |
| 4esjA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 40.0 | 3.62e-01 | 91.5% | 74.4% |
| 1bw6A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.51 | 37.0 | 3.83e-01 | 91.5% | 87.5% |
| 1su0B00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.50 | 42.0 | 3.33e-01 | 96.6% | 94.1% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3800338 | 109.4.1.429 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HDS | 0.68 | 58.0 | 4.03e-01 | 98.3% | 31.2% |
| None | — | 0.65 | 51.0 | 3.28e-01 | 100.0% | 16.6% | |
| 3729854 | 109.49.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in acetyl-CoA carboxylase › Helical domain in acetyl-CoA carboxylase › ACC_central | 0.61 | 51.0 | 3.43e-01 | 100.0% | 24.2% |
| 5049680 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.61 | 52.0 | 4.34e-01 | 100.0% | 63.6% |
| 4024251 | 4984.1.1.0 ↗ | alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain | 0.61 | 50.0 | 4.10e-01 | 96.6% | 90.8% |
| 4022166 | 109.4.1.17 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin | 0.61 | 47.0 | 3.83e-01 | 93.2% | 44.3% |
| 3626462 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.61 | 53.0 | 4.31e-01 | 100.0% | 90.4% |
| 4021696 | 109.4.1.307 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tho2 | 0.59 | 49.0 | 3.14e-01 | 100.0% | 37.1% |
| 4561977 | 1065.1.1.1 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain › SPX | 0.58 | 43.0 | 2.91e-01 | 79.7% | 49.6% |
| 4353448 | 604.11.1.1 ↗ | alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S | 0.57 | 43.0 | 4.21e-01 | 83.1% | 73.8% |
| 3814947 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.56 | 44.0 | 3.18e-01 | 89.8% | 91.1% |
| 3832917 | 185.1.1.2 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › LTP_2 | 0.56 | 44.0 | 4.12e-01 | 93.2% | 85.0% |
| 5081699 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.56 | 47.0 | 4.15e-01 | 96.6% | 100.0% |
| 3583168 | 101.1.2.490 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_CHMP7 | 0.56 | 44.0 | 3.73e-01 | 93.2% | 66.4% |
| 3664462 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.56 | 46.0 | 3.12e-01 | 100.0% | 31.7% |
| 3615940 | 4163.1.2.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 | 0.56 | 46.0 | 3.83e-01 | 100.0% | 53.3% |
| 2563460 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.55 | 39.0 | 2.84e-01 | 76.3% | 26.6% |
| 4362692 | 186.1.1.1 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 | 0.55 | 45.0 | 3.88e-01 | 94.9% | 98.0% |
| 4666571 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.55 | 38.0 | 3.48e-01 | 72.9% | 71.2% |
| 3714391 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 41.0 | 3.89e-01 | 88.1% | 93.3% |
| 4990419 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.54 | 46.0 | 3.49e-01 | 100.0% | 65.6% |
| 3697275 | 192.29.1.104 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4149 | 0.54 | 43.0 | 3.28e-01 | 100.0% | 56.4% |
| 3263961 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.54 | 39.0 | 2.92e-01 | 81.4% | 89.1% |
| 3486029 | 4015.1.1.1 ↗ | alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 | 0.54 | 44.0 | 3.03e-01 | 100.0% | 24.0% |
| 4947616 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.54 | 43.0 | 2.79e-01 | 94.9% | 36.6% |
| 4184803 | 4163.1.2.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 | 0.53 | 45.0 | 3.83e-01 | 100.0% | 60.0% |
| 3430353 | 4163.1.2.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 | 0.53 | 44.0 | 3.57e-01 | 96.6% | 48.8% |
| 3197266 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.53 | 41.0 | 4.01e-01 | 89.8% | 87.1% |
| 3742161 | 4163.1.2.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 | 0.53 | 44.0 | 3.72e-01 | 100.0% | 56.4% |
| 3954906 | 378.1.1.23 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 | 0.51 | 41.0 | 3.11e-01 | 91.5% | 85.8% |
| 4983449 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.50 | 35.0 | 2.93e-01 | 74.6% | 52.2% |
D4
medium
residues 198-319