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hypothetical_protein_pdul_cds_600

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_600__YP_008319392__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008319392 ↗
Protein ID:
hypothetical_protein_pdul_cds_600
Kingdom:
euk

Quality

73.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (47 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 378-481
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r5sA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 51.0 5.48e-01 85.6% 100.0%
7ru9C01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 53.0 3.95e-01 90.4% 40.1%
7y4rB01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.63 41.0 4.14e-01 76.0% 65.1%
3beyD00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.61 40.0 4.22e-01 91.3% 74.5%
6whbA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 52.0 3.92e-01 100.0% 53.1%
8a0rA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 47.0 4.47e-01 94.2% 98.5%
4irnA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.57 39.0 3.79e-01 70.2% 87.4%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.55 44.0 4.45e-01 88.5% 92.1%
1konA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.54 33.0 3.86e-01 92.3% 91.2%
1f16A00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.53 36.0 3.02e-01 70.2% 39.6%
6tqpA01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.53 38.0 3.56e-01 76.9% 61.0%
3zc0D00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 45.0 3.81e-01 100.0% 72.7%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.51 36.0 3.44e-01 75.0% 91.5%
2lseA00 1.20.120.1360 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.50 41.0 4.15e-01 94.2% 91.1%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3933426 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 55.0 5.74e-01 95.2% 95.8%
3424786 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.63 50.0 4.02e-01 99.0% 42.4%
3808268 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 52.0 4.44e-01 100.0% 56.5%
3248929 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.61 50.0 4.15e-01 88.5% 76.8%
4626046 109.4.1.3337 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Foie-gras_1, PF30051 0.61 55.0 4.55e-01 100.0% 93.5%
3429997 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.61 53.0 5.31e-01 98.1% 94.3%
3659118 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.60 48.0 4.26e-01 87.5% 59.4%
3421464 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 52.0 4.14e-01 100.0% 47.4%
3783376 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.58 48.0 3.76e-01 89.4% 69.8%
3696047 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 45.0 3.77e-01 91.3% 50.3%
3421799 109.27.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 0.55 46.0 4.54e-01 94.2% 98.3%
3755359 109.4.1.198 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.54 46.0 3.88e-01 100.0% 54.6%
3313 5000.3.1.1 ↗ alpha arrays › Toxins' membrane translocation domains › Bcl-2 inhibitors of programmed cell death › Bcl-2 inhibitors of programmed cell death › Bcl-2 0.53 36.0 3.02e-01 70.2% 39.6%
D2 medium residues 482-521_542-567
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_636__YP_008437599__Pandoravirus_salinus__1349410__D511-537_569-595
D3 medium residues 568-618
PDB
Domain cluster: rep: hypothetical_protein_pdul_cds_901__YP_008319801__Pandoravirus_dulcis__1349409__D646-695
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6cfcA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.66 52.0 3.75e-01 90.2% 88.8%
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.61 46.0 3.49e-01 84.3% 45.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4433755 109.4.1.1253 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Atp25_C 0.72 60.0 3.77e-01 92.2% 25.5%
3190733 102.1.3.7 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › Nrap_D5 0.67 47.0 3.12e-01 74.5% 90.0%
3610521 2006.1.4.10 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 0.61 51.0 3.71e-01 98.0% 71.0%
None — 0.60 49.0 3.30e-01 96.1% 61.6%
5000903 187.1.1.1 ↗ alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_8 0.59 48.0 3.63e-01 98.0% 36.8%
3319609 7542.1.1.0 ↗ a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain 0.57 46.0 3.52e-01 90.2% 56.7%
None — 0.52 44.0 2.74e-01 100.0% 43.4%