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hypothetical_protein_pdul_cds_651

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_651__YP_008319464__Pandoravirus_dulcis__1349409

Identity

Accession:: YP_008319464 ↗
Protein ID:: hypothetical_protein_pdul_cds_651
Kingdom:: euk

Quality

64.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 295-377

PDB

Domain cluster: representative

CATH (20)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4od8D00	6.10.140.1880	Special › Helix non-globular › Helix Hairpins ›	0.66	40.0	4.91e-01	88.0%	100.0%
3ubkB02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.60	51.0	4.51e-01	96.4%	75.2%
2wc7A01	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.60	50.0	3.28e-01	95.2%	46.9%
5mdtA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.59	46.0	3.87e-01	85.5%	88.2%
3rk6A00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.58	49.0	3.72e-01	97.6%	70.0%
5nl6B01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	42.0	3.68e-01	79.5%	81.0%
2ee4A01	1.10.555.10	Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein	0.55	47.0	3.67e-01	98.8%	92.7%
1k92A01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.55	45.0	3.62e-01	89.2%	70.0%
4xkyA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.54	44.0	3.04e-01	100.0%	24.8%
3d0cB00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.54	43.0	2.98e-01	88.0%	32.0%
3l22A00	1.25.40.390	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.54	41.0	2.71e-01	86.7%	71.1%
2ooeA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.53	43.0	3.31e-01	89.2%	62.1%
5afdA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.52	44.0	3.03e-01	100.0%	25.7%
3k7xA00	1.50.10.20	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.52	44.0	3.03e-01	100.0%	47.0%
2yksA02	1.20.58.390	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain	0.52	39.0	3.50e-01	79.5%	65.8%
1zeeA01	1.20.58.600	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	44.0	3.98e-01	95.2%	82.2%
4nzpA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.52	42.0	3.58e-01	89.2%	61.6%
1lshA02	1.25.10.20	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Vitellinogen, superhelical	0.51	43.0	2.98e-01	100.0%	33.4%
5jpoD02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.51	43.0	3.77e-01	100.0%	78.2%
2b6cA02	1.25.40.290	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat domains	0.50	43.0	4.17e-01	100.0%	100.0%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3706492	109.4.1.1775 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF5393	0.70	51.0	3.83e-01	77.1%	49.0%
1196750	109.1.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C	0.61	52.0	4.48e-01	95.2%	72.1%
3994604	109.4.1.470 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS2	0.58	50.0	3.60e-01	100.0%	38.5%
4020438	109.12.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › C-terminal domain of Ku80 › C-terminal domain of Ku80	0.58	45.0	3.81e-01	91.6%	48.3%
4016398	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	50.0	2.99e-01	97.6%	29.5%
3514164	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	50.0	2.98e-01	100.0%	21.4%
3427594	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	49.0	3.99e-01	100.0%	69.9%
4369430	2002.1.1.29 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS	0.56	46.0	3.17e-01	100.0%	25.1%
3474105	109.4.1.557 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TTC7_N	0.54	47.0	3.65e-01	97.6%	57.3%
3543525	150.3.1.6 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL10	0.54	40.0	3.35e-01	79.5%	74.5%
2857735	5057.1.1.1 ↗	alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb	0.54	41.0	3.94e-01	81.9%	79.4%
3424788	109.4.1.420 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR	0.53	43.0	3.45e-01	100.0%	42.2%
3028309	5057.1.1.1 ↗	alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb	0.53	41.0	4.05e-01	81.9%	86.4%
3216107	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	45.0	4.05e-01	100.0%	72.0%
3396400	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.52	40.0	3.55e-01	84.3%	86.4%
4646569	4994.1.1.1 ↗	alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507	0.52	38.0	3.64e-01	77.1%	83.2%
3686583	109.4.1.1238 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zn_clus	0.51	45.0	2.88e-01	100.0%	27.7%
3937918	5057.1.1.0 ↗	alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore	0.51	43.0	3.70e-01	90.4%	96.9%
3417527	109.4.1.11 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI3Ka	0.51	44.0	3.41e-01	98.8%	42.1%
5009917	304.139.1.2 ↗	a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs	0.51	37.0	2.51e-01	78.3%	35.1%

D2 medium residues 118-161_174-279

PDB

D3 medium residues 388-491

PDB

Domain cluster: rep: hypothetical_protein_pmac_cds_768__YP_009481452__Pandoravirus_macleodensis__2107707__D329-415

D4 medium residues 492-566

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2bi7A01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.55	42.0	3.18e-01	84.0%	52.7%
2ehgA00	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.53	38.0	3.17e-01	80.0%	72.5%
4lj3A00	3.20.20.450	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain	0.52	45.0	3.17e-01	100.0%	43.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3615231	2006.1.4.10 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4	0.68	53.0	3.60e-01	82.7%	32.3%
3729105	109.4.1.356 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans	0.59	48.0	3.10e-01	96.0%	20.5%
389395	2004.1.1.79 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin	0.52	40.0	3.04e-01	86.7%	78.8%
3364368	2004.1.1.135 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1	0.50	38.0	3.63e-01	84.0%	72.2%