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hypothetical_protein_pdul_cds_654
Euk-VirPandoravirus_dulcis
hypothetical_protein_pdul_cds_654__YP_008319468__Pandoravirus_dulcis__1349409
Identity
- Accession:
- YP_008319468 ↗
- Protein ID:
- hypothetical_protein_pdul_cds_654
- Kingdom:
- euk
Quality
75.1
mean pLDDT
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 66-169
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v8qB00 | 6.20.250.60 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.59 | 30.0 | 3.51e-01 | 100.0% | 68.5% |
| 3fg8A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 39.0 | 3.89e-01 | 72.1% | 86.8% |
| 2grgA01 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.55 | 36.0 | 3.92e-01 | 70.2% | 81.9% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.54 | 29.0 | 3.38e-01 | 97.1% | 79.0% |
| 4j3cA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.54 | 31.0 | 3.70e-01 | 95.2% | 90.6% |
| 6mzoA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 34.0 | 3.24e-01 | 100.0% | 52.4% |
| 1ztuA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 37.0 | 3.29e-01 | 72.1% | 58.9% |
| 3ix3A00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.52 | 40.0 | 3.55e-01 | 83.7% | 84.7% |
| 5fl3A01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 44.0 | 4.49e-01 | 99.0% | 98.0% |
| 1p9rA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 44.0 | 4.33e-01 | 100.0% | 90.1% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 27.0 | 2.86e-01 | 94.2% | 54.4% |
| 2gsbA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 28.0 | 3.04e-01 | 100.0% | 61.9% |
| 3o6qA02 | 3.30.70.2720 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 32.0 | 3.12e-01 | 76.0% | 57.0% |
| 2vxzA02 | 1.10.10.1490 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.50 | 37.0 | 3.90e-01 | 100.0% | 95.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 145216 | 4086.1.1.1 ↗ | a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI | 0.60 | 35.0 | 3.51e-01 | 100.0% | 55.8% |
| 1125751 | 4086.1.1.1 ↗ | a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI | 0.59 | 33.0 | 3.57e-01 | 100.0% | 63.6% |
| 4955544 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.57 | 25.0 | 3.24e-01 | 99.0% | 70.0% |
| 3492415 | 4086.1.1.1 ↗ | a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI | 0.57 | 33.0 | 3.76e-01 | 100.0% | 78.7% |
| 4216425 | 391.1.2.3 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC | 0.56 | 30.0 | 3.28e-01 | 70.2% | 61.9% |
| 3240591 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.55 | 38.0 | 2.92e-01 | 72.1% | 50.8% |
| 3630575 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 38.0 | 2.83e-01 | 99.0% | 28.7% |
| 3181098 | 223.1.1.94 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS-like | 0.53 | 37.0 | 3.82e-01 | 71.2% | 88.4% |
| 4542815 | 223.1.1.12 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 | 0.53 | 37.0 | 3.39e-01 | 72.1% | 65.0% |
| 4945126 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 37.0 | 3.48e-01 | 72.1% | 62.3% |
| 4866061 | 223.1.1.12 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 | 0.52 | 36.0 | 3.71e-01 | 72.1% | 89.2% |
| 4872607 | 223.1.1.12 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 | 0.52 | 31.0 | 3.12e-01 | 81.7% | 55.9% |
| 5068036 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.51 | 20.0 | 2.96e-01 | 100.0% | 82.2% |
| 4959123 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.51 | 36.0 | 3.55e-01 | 72.1% | 91.8% |
| 3211452 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.51 | 37.0 | 4.00e-01 | 100.0% | 95.2% |
| 5049089 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 37.0 | 3.58e-01 | 76.9% | 72.5% |
| 3299766 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 35.0 | 3.08e-01 | 72.1% | 87.3% |
| 3175364 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.50 | 38.0 | 3.41e-01 | 85.6% | 55.5% |
D2
medium
residues 1-65