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hypothetical_protein_pdul_cds_656

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_656__YP_009430245__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_009430245 ↗
Protein ID:
hypothetical_protein_pdul_cds_656
Kingdom:
euk

Quality

67.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (39 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 118-315
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009480767__Pandoravirus_macleodensis__2107707__D109-271
D2 medium residues 316-379
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_700__YP_008437727__Pandoravirus_salinus__1349410__D284-338
D3 medium residues 380-401_420-473
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.80 47.0 4.91e-01 98.7% 64.3%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 45.0 4.91e-01 100.0% 79.0%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 45.0 5.00e-01 100.0% 84.5%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.70 45.0 3.96e-01 98.7% 45.4%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.69 45.0 4.72e-01 100.0% 74.6%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 41.0 4.50e-01 82.9% 82.0%
2ikbC00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.62 50.0 4.04e-01 93.4% 59.0%
7smgD00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.61 47.0 3.89e-01 85.5% 88.7%
3iqtA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.60 40.0 3.54e-01 86.8% 46.5%
3efzB00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.59 49.0 3.53e-01 92.1% 45.3%
6axfA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.58 45.0 4.03e-01 88.2% 83.8%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.57 46.0 4.72e-01 93.4% 95.8%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 45.0 4.57e-01 86.8% 93.2%
5fgzA02 1.10.3810.10 Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like 0.56 41.0 3.23e-01 77.6% 49.1%
4ie5A02 1.20.58.1470 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FTO C-terminal domain 0.55 45.0 3.87e-01 94.7% 89.6%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 43.0 4.40e-01 86.8% 89.3%
2r17C00 1.25.40.660 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein 35, helical subcomplex Vps35-C 0.54 45.0 3.03e-01 92.1% 35.2%
2a2fX02 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.54 42.0 3.60e-01 86.8% 84.5%
5aioA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 42.0 3.32e-01 84.2% 45.2%
1hxiA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 44.0 3.90e-01 90.8% 67.0%
4ls9B01 3.90.1640.10 Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › inorganic pyrophosphatase (n-terminal core) 0.52 42.0 3.18e-01 89.5% 90.3%
2rpaA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 42.0 4.18e-01 86.8% 88.3%
4r42A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 43.0 3.33e-01 96.1% 72.2%
2xppA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.51 43.0 3.57e-01 93.4% 63.5%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 44.0 3.76e-01 100.0% 74.4%
4an8A02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.51 42.0 3.73e-01 98.7% 87.7%
3rc3A05 1.20.58.1080 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 38.0 3.44e-01 85.5% 75.2%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5001078 633.2.1.0 ↗ alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein 0.69 49.0 4.56e-01 86.8% 58.9%
3728650 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.67 43.0 4.52e-01 100.0% 71.4%
4959934 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.65 54.0 5.46e-01 92.1% 100.0%
4030521 604.12.1.2 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.63 48.0 4.88e-01 86.8% 82.7%
3992672 109.4.1.911 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG6_C 0.63 46.0 2.81e-01 86.8% 11.6%
3258587 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.62 49.0 3.76e-01 86.8% 69.4%
3163958 507.1.1.2 ↗ alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaG_DnaB_bind 0.60 51.0 4.23e-01 96.1% 95.0%
3727981 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 3.95e-01 90.8% 92.3%
3974488 532.2.1.0 ↗ alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains 0.60 48.0 4.63e-01 85.5% 80.0%
3732868 3924.1.1.1 ↗ alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Fungal_trans_2 0.60 50.0 3.22e-01 93.4% 26.3%
3108769 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.59 44.0 4.58e-01 85.5% 84.5%
3486164 109.4.1.200 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_14 0.59 49.0 4.11e-01 89.5% 83.2%
3468690 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 48.0 3.72e-01 88.2% 65.5%
3487907 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 49.0 3.95e-01 89.5% 76.4%
3868341 109.6.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF_N 0.58 48.0 4.05e-01 90.8% 72.3%
4009330 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.58 49.0 3.86e-01 94.7% 49.1%
3686594 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.58 44.0 4.38e-01 81.6% 77.5%
3483761 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.58 50.0 3.90e-01 96.1% 52.7%
4854358 5001.1.1.111 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.58 50.0 3.40e-01 100.0% 46.3%
3697356 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 43.0 4.22e-01 81.6% 88.2%
4025657 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.57 47.0 3.51e-01 93.4% 39.0%
3198374 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.57 47.0 2.91e-01 93.4% 27.3%
3505829 101.1.2.507 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 0.57 47.0 3.87e-01 94.7% 78.7%
3625185 109.4.1.911 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG6_C 0.57 45.0 2.75e-01 88.2% 22.1%
3711949 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.56 49.0 3.47e-01 96.1% 46.0%
3316034 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 46.0 3.26e-01 92.1% 37.9%
3385165 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.55 46.0 3.34e-01 93.4% 52.9%
3786941 109.4.1.1685 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27595, PF30849 0.55 48.0 2.79e-01 97.4% 13.9%
5010578 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.55 47.0 4.53e-01 98.7% 90.0%
3740779 604.12.1.2 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 0.55 41.0 4.13e-01 84.2% 80.0%
3290011 3843.1.1.4 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB 0.55 42.0 3.99e-01 85.5% 75.8%
4602548 109.4.1.206 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › YfiO 0.54 45.0 3.78e-01 93.4% 61.5%
3832084 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 41.0 4.13e-01 85.5% 85.3%
3481781 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.53 42.0 4.18e-01 86.8% 83.7%
3933326 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.53 45.0 3.79e-01 98.7% 77.1%
3342524 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.53 44.0 3.57e-01 92.1% 54.5%
3986352 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.52 43.0 2.91e-01 92.1% 88.0%
3297097 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.51 41.0 3.80e-01 93.4% 71.4%