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hypothetical_protein_pdul_cds_820
Euk-VirPandoravirus_dulcis
hypothetical_protein_pdul_cds_820__YP_008319696__Pandoravirus_dulcis__1349409
Identity
- Accession:
- YP_008319696 ↗
- Protein ID:
- hypothetical_protein_pdul_cds_820
- Kingdom:
- euk
Quality
70.3
mean pLDDT
Cluster
View cluster (27 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 431-640
Domain cluster:
rep: hypothetical_protein_psal_cds_864__YP_008438002__Pandoravirus_salinus__1349410__D468-489_547-758
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.65 | 40.0 | 4.79e-01 | 98.1% | 89.0% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.63 | 39.0 | 4.66e-01 | 97.6% | 88.4% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.63 | 41.0 | 4.69e-01 | 97.6% | 88.4% |
| 2w4yA00 | 2.40.160.220 | Mainly Beta › Beta Barrel › Porin › | 0.55 | 29.0 | 3.74e-01 | 88.6% | 86.9% |
| 3bf2A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.54 | 30.0 | 3.76e-01 | 95.7% | 88.8% |
| 1tk1A00 | 3.40.1500.10 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic | 0.52 | 46.0 | 4.59e-01 | 100.0% | 90.0% |
| 1ut7B01 | 2.170.150.80 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain | 0.52 | 21.0 | 2.68e-01 | 75.7% | 57.6% |
| 5eo6B00 | 3.40.1500.10 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic | 0.52 | 47.0 | 4.18e-01 | 100.0% | 71.0% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.51 | 30.0 | 3.35e-01 | 95.7% | 72.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3920557 | 4210.1.1.3 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain › PF26166 | 0.70 | 29.0 | 4.16e-01 | 78.1% | 82.1% |
| 3832952 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.51 | 26.0 | 2.87e-01 | 93.3% | 56.9% |
| 3598574 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.50 | 35.0 | 2.82e-01 | 71.4% | 66.8% |
D2
medium
residues 68-87_124-249
D3
medium
residues 250-333
Domain cluster:
rep: hypothetical_protein_pneo_cds_683__YP_009482293__Pandoravirus_neocaledonia__2107708__D250-332
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fqmA01 | 2.20.25.210 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B | 0.69 | 29.0 | 3.37e-01 | 70.2% | 52.5% |
| 2m7oA00 | 3.10.450.400 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 | 0.61 | 46.0 | 4.97e-01 | 84.5% | 97.1% |
| 2xepB01 | 3.10.450.280 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 46.0 | 4.15e-01 | 83.3% | 82.5% |
| 1s67L00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 39.0 | 3.58e-01 | 73.8% | 81.5% |
| 3oloA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 39.0 | 3.61e-01 | 72.6% | 79.3% |
| 4fdtB00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.56 | 43.0 | 2.87e-01 | 85.7% | 88.1% |
| 4agiA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.56 | 44.0 | 3.01e-01 | 85.7% | 41.1% |
| 8axiA01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.55 | 44.0 | 2.92e-01 | 88.1% | 41.3% |
| 3ld7A00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.55 | 41.0 | 4.05e-01 | 86.9% | 75.9% |
| 3mvgA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.55 | 40.0 | 3.22e-01 | 76.2% | 61.3% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 37.0 | 3.34e-01 | 70.2% | 60.2% |
| 4za3A01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.54 | 39.0 | 3.20e-01 | 76.2% | 65.6% |
| 1zylA01 | 3.30.200.70 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.53 | 39.0 | 4.20e-01 | 76.2% | 100.0% |
| 4obiA00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.53 | 39.0 | 3.91e-01 | 85.7% | 74.7% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 44.0 | 4.33e-01 | 91.7% | 98.9% |
| 1wibA00 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.50 | 32.0 | 3.16e-01 | 89.3% | 58.7% |
| 2a2jA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 41.0 | 3.19e-01 | 92.9% | 88.7% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1005445 | 243.11.1.1 ↗ | a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › DUF4651 | 0.61 | 46.0 | 4.97e-01 | 84.5% | 97.1% |
| 5039633 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 44.0 | 4.66e-01 | 82.1% | 85.1% |
| 3481490 | 241.4.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom | 0.58 | 45.0 | 4.08e-01 | 85.7% | 70.8% |
| 4951266 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.54 | 38.0 | 2.50e-01 | 82.1% | 15.5% |
| 5059043 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 41.0 | 2.82e-01 | 86.9% | 61.4% |
| 3277405 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.53 | 45.0 | 3.36e-01 | 100.0% | 82.0% |
| 3209694 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 35.0 | 3.37e-01 | 71.4% | 66.0% |
| 4403478 | 298.1.1.8 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C | 0.52 | 43.0 | 3.16e-01 | 91.7% | 45.4% |
| 4031949 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.51 | 42.0 | 2.87e-01 | 92.9% | 55.0% |
| 3927330 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.51 | 36.0 | 3.59e-01 | 72.6% | 94.1% |
| 4937428 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.50 | 41.0 | 3.43e-01 | 88.1% | 69.7% |
| 2905 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.50 | 32.0 | 3.16e-01 | 89.3% | 58.7% |