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hypothetical_protein_pdul_cds_836

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_836__YP_008319716__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008319716 ↗
Protein ID:
hypothetical_protein_pdul_cds_836
Kingdom:
euk

Quality

63.5 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-191
PDB
D2 high residues 193-245
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.76 58.0 5.91e-01 81.1% 88.2%
2b5dX02 1.20.1430.10 Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain 0.76 65.0 5.00e-01 96.2% 43.9%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.75 58.0 4.01e-01 84.9% 29.0%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.74 58.0 5.45e-01 84.9% 70.3%
3r0qA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.72 54.0 3.63e-01 81.1% 20.7%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.67 47.0 4.12e-01 73.6% 49.4%
1darA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 47.0 2.94e-01 77.4% 15.1%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 57.0 4.54e-01 100.0% 61.5%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 50.0 4.20e-01 100.0% 49.4%
1e52A00 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.65 49.0 4.86e-01 83.0% 83.9%
1id1A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 48.0 3.48e-01 81.1% 47.1%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 44.0 2.76e-01 77.4% 74.9%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.59 46.0 4.42e-01 90.6% 100.0%
4i5jA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 42.0 3.08e-01 79.2% 29.9%
1ak2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 40.0 2.74e-01 83.0% 20.5%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.54 37.0 3.85e-01 79.2% 83.3%
3r0vA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 42.0 2.70e-01 86.8% 54.5%
4iofB01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 43.0 3.15e-01 98.1% 74.6%
2llwA00 1.10.260.100 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.52 39.0 3.67e-01 88.7% 73.2%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3784175 7579.1.1.53 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Say1_Mug180 0.90 69.0 3.96e-01 81.1% 9.8%
3962282 3419.1.1.2 ↗ alpha bundles › Antitoxin VbhA › Antitoxin VbhA › Antitoxin VbhA › VbhA 0.90 66.0 6.51e-01 77.4% 74.5%
3474929 3911.1.1.1 ↗ extended segments › Exosome complex protein LRP1 › Exosome complex protein LRP1 › Exosome complex protein LRP1 › Sas10_Utp3 0.83 65.0 4.88e-01 84.9% 36.7%
3608317 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.81 60.0 5.21e-01 79.2% 52.5%
3533511 3911.1.1.1 ↗ extended segments › Exosome complex protein LRP1 › Exosome complex protein LRP1 › Exosome complex protein LRP1 › Sas10_Utp3 0.81 63.0 5.21e-01 83.0% 48.9%
1792251 3616.1.1.2 ↗ alpha bundles › ExoU toxin middle helical domain › ExoU toxin middle helical domain › ExoU toxin middle helical domain › VipD-like_C 0.77 64.0 4.64e-01 92.5% 69.9%
4595581 101.10.1.0 ↗ alpha arrays › HTH › Hypothetical protein YhaI › Hypothetical protein YhaI 0.77 68.0 5.24e-01 100.0% 89.2%
4281883 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.77 60.0 4.41e-01 84.9% 33.3%
3533614 7515.1.1.4 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,Sulfatase_C 0.76 59.0 3.34e-01 83.0% 7.9%
3204414 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.74 60.0 3.58e-01 88.7% 35.9%
3306934 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.74 55.0 4.38e-01 84.9% 39.1%
3321357 609.1.1.1 ↗ alpha bundles › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › Domain of poly(ADP-ribose) polymerase › PARP_reg 0.73 62.0 5.08e-01 96.2% 62.0%
5004067 192.3.1.1 ↗ alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Sod_Fe_N 0.73 56.0 4.85e-01 84.9% 52.9%
3451533 192.29.1.237 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF3755 0.72 60.0 5.31e-01 94.3% 90.0%
3741603 603.1.1.5 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.72 63.0 4.70e-01 96.2% 80.0%
4097441 192.3.1.1 ↗ alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Sod_Fe_N 0.72 55.0 5.35e-01 84.9% 75.0%
3384378 109.4.1.3036 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_At1g68980 0.71 55.0 3.11e-01 83.0% 8.3%
4948627 228.1.1.1 ↗ a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.71 56.0 3.91e-01 88.7% 71.3%
3651529 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.70 52.0 3.68e-01 79.2% 51.3%
5017114 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 49.0 3.44e-01 73.6% 24.4%
3176794 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.69 48.0 3.55e-01 73.6% 27.9%
3966542 2486.1.1.0 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase 0.66 48.0 3.13e-01 81.1% 16.0%
3707335 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.65 57.0 5.07e-01 98.1% 81.3%
3434546 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.65 48.0 4.84e-01 83.0% 81.8%
5074546 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 40.0 3.53e-01 73.6% 47.1%
3705291 2004.1.1.197 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_3 0.58 50.0 3.56e-01 100.0% 64.7%
3403603 2004.1.1.51 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 0.54 44.0 2.71e-01 90.6% 46.9%