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hypothetical_protein_pdul_cds_933
Euk-VirPandoravirus_dulcis
hypothetical_protein_pdul_cds_933__YP_008319848__Pandoravirus_dulcis__1349409
Identity
- Accession:
- YP_008319848 ↗
- Protein ID:
- hypothetical_protein_pdul_cds_933
- Kingdom:
- euk
Quality
73.5
mean pLDDT
Cluster
View cluster (44 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-140
D2
high
residues 157-311
D3
medium
residues 328-428
D4
medium
residues 429-501
Domain cluster:
rep: hypothetical_protein_psal_cds_1202__YP_008438578__Pandoravirus_salinus__1349410__D433-488
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.64 | 50.0 | 4.31e-01 | 86.3% | 100.0% |
| 3s27A02 | 1.20.120.1230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.63 | 55.0 | 4.59e-01 | 98.6% | 76.0% |
| 1d5tA03 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.61 | 50.0 | 4.52e-01 | 93.2% | 100.0% |
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 51.0 | 4.80e-01 | 97.3% | 95.7% |
| 2j9wB00 | 1.20.120.1130 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain | 0.61 | 49.0 | 4.54e-01 | 93.2% | 93.9% |
| 1ze0A01 | 1.20.120.700 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nitrate reductase, subunit delta (NarJ) | 0.57 | 46.0 | 4.44e-01 | 91.8% | 90.5% |
| 3anwB00 | 1.20.58.2050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 37.0 | 2.95e-01 | 71.2% | 44.4% |
| 2d5rA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 37.0 | 2.64e-01 | 72.6% | 83.7% |
| 3vkgA08 | 1.10.472.130 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain | 0.53 | 39.0 | 3.13e-01 | 93.2% | 36.9% |
| 2fgyA01 | 1.20.120.1310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain | 0.53 | 40.0 | 3.62e-01 | 84.9% | 58.9% |
| 1dv5A00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.52 | 41.0 | 4.02e-01 | 89.0% | 95.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3993846 | 314.1.1.1 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 | 0.66 | 46.0 | 2.92e-01 | 91.8% | 13.8% |
| 428738 | 629.1.1.1 ↗ | alpha bundles › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › TorD-like (Pfam 06192) › Nitrate_red_del | 0.64 | 52.0 | 3.95e-01 | 89.0% | 91.9% |
| 3373509 | 314.1.1.1 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 | 0.64 | 45.0 | 2.82e-01 | 89.0% | 13.3% |
| 3668516 | 314.1.1.1 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 | 0.64 | 45.0 | 2.85e-01 | 91.8% | 13.8% |
| 3600794 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.62 | 46.0 | 4.23e-01 | 79.5% | 70.5% |
| 3717637 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 45.0 | 4.11e-01 | 80.8% | 66.0% |
| None | — | 0.57 | 44.0 | 2.78e-01 | 84.9% | 23.1% | |
| 3415514 | 132.1.1.2 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › Ribosomal_L50 | 0.56 | 44.0 | 3.97e-01 | 90.4% | 61.2% |
| 4936297 | 304.48.1.32 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD | 0.55 | 46.0 | 3.54e-01 | 95.9% | 62.3% |
| 3795237 | 4207.1.2.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region | 0.54 | 44.0 | 3.93e-01 | 95.9% | 65.2% |
| 3620083 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.54 | 41.0 | 3.26e-01 | 86.3% | 97.1% |
| 5069322 | 4163.1.2.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 | 0.51 | 35.0 | 3.19e-01 | 100.0% | 50.5% |
| 3713293 | 206.1.3.25 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_4 | 0.51 | 43.0 | 2.67e-01 | 93.2% | 52.9% |
| 4402544 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.51 | 35.0 | 2.97e-01 | 74.0% | 71.1% |
| 4941834 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.50 | 35.0 | 3.13e-01 | 100.0% | 48.7% |