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hypothetical_protein_pdul_cds_963

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_963__YP_008319885__Pandoravirus_dulcis__1349409

Identity

Accession:: YP_008319885 ↗
Protein ID:: hypothetical_protein_pdul_cds_963
Kingdom:: euk

Quality

77.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (72 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-46_143-200_229-279

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4it4A02	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.66	43.0	5.23e-01	75.0%	100.0%
6wm2P02	1.25.40.150	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › V-type ATPase, subunit H, C-terminal domain	0.64	42.0	4.74e-01	93.6%	86.2%
2fji101	1.10.357.50	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.62	50.0	4.39e-01	86.4%	83.3%
3l09A01	1.20.58.1460	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.61	42.0	4.91e-01	80.7%	100.0%
4yjwA00	1.20.120.930	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829	0.61	39.0	3.79e-01	83.6%	58.2%
3vnxA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.61	42.0	3.74e-01	70.0%	75.4%
1t72A01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.61	42.0	4.51e-01	70.0%	88.9%
2nwbA02	1.20.58.480	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	51.0	4.27e-01	91.4%	91.6%
1o5hA00	1.20.120.680	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle	0.58	47.0	4.19e-01	87.1%	85.0%
3vkgB06	1.20.920.20	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A ›	0.55	40.0	3.24e-01	84.3%	42.4%
2vvyA01	1.10.437.20	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus	0.54	36.0	3.71e-01	85.0%	69.4%
3m0fB02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.50	38.0	3.98e-01	95.7%	89.4%
2x0cA01	1.20.1420.10	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain	0.50	38.0	3.55e-01	79.3%	69.7%

ECOD (28)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3616098	5057.1.1.0 ↗	alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore	0.70	45.0	4.36e-01	70.0%	57.2%
5000698	604.38.1.0 ↗	alpha bundles › Spectrin repeat-like › Legionella effector SdeA 3-helical bundle › Legionella effector SdeA 3-helical bundle	0.69	50.0	5.69e-01	82.9%	98.1%
4877500	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.67	40.0	4.69e-01	85.7%	81.6%
3854699	3860.1.1.285 ↗	alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › Casc1_N	0.67	45.0	5.10e-01	75.7%	90.5%
4876530	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.67	40.0	5.07e-01	84.3%	98.8%
5065235	101.1.2.738 ↗	alpha arrays › HTH › HTH › winged helix domain › Vir_act_alpha_C	0.65	46.0	4.17e-01	72.9%	85.9%
4880296	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.65	39.0	4.86e-01	85.0%	96.6%
4878961	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.64	40.0	4.54e-01	86.4%	81.3%
3998828	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.62	40.0	4.06e-01	85.0%	65.7%
3609066	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.61	45.0	4.96e-01	82.9%	93.9%
3547465	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.61	43.0	4.21e-01	85.0%	67.3%
3480868	5054.1.1.9 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › PKD_channel	0.59	43.0	3.35e-01	74.3%	40.3%
3377989	174.1.1.49 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7733	0.58	50.0	4.23e-01	92.1%	87.6%
3933742	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.58	42.0	4.02e-01	74.3%	68.8%
3600887	601.19.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein	0.58	51.0	4.50e-01	96.4%	72.7%
3564452	220.1.1.4 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1	0.57	47.0	2.87e-01	89.3%	49.7%
3571176	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	46.0	3.00e-01	85.7%	33.8%
3431118	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.57	40.0	4.39e-01	75.7%	89.1%
3217600	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	51.0	3.56e-01	99.3%	38.7%
3486899	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	46.0	4.05e-01	87.1%	65.7%
3738017	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	47.0	3.56e-01	90.0%	52.4%
3575793	632.8.1.2 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › Alpha-2-MRAP_C	0.55	37.0	4.16e-01	80.7%	88.2%
3817864	7016.1.1.0 ↗	extended segments › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain › Palmitoyltransferase DHHC C-terminal domain	0.54	44.0	4.55e-01	92.1%	88.1%
None	—		0.54	46.0	3.18e-01	93.6%	67.4%
3802509	7015.1.1.0 ↗	alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain	0.52	42.0	4.11e-01	91.4%	79.3%
3892397	4177.1.1.2 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR	0.51	45.0	3.47e-01	92.9%	79.3%
4093008	192.29.1.157 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › MG280	0.51	41.0	3.54e-01	86.4%	58.6%
3410197	7015.1.1.1 ↗	alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC	0.50	43.0	3.46e-01	91.4%	79.6%

D2 medium residues 47-142_201-228

PDB

Domain cluster: rep: hypothetical_protein_pdul_cds_571__YP_008319358__Pandoravirus_dulcis__1349409__D39-147_201-233

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3i3tA00	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.60	36.0	2.67e-01	77.4%	24.4%
1mkfA02	2.60.40.1340	Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like	0.54	40.0	3.59e-01	77.4%	66.3%
2lfuA02	2.40.160.90	Mainly Beta › Beta Barrel › Porin ›	0.53	37.0	3.69e-01	70.2%	95.3%
4egvA02	2.40.50.840	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.53	25.0	3.12e-01	96.8%	70.7%
6ijfC01	3.90.1720.80	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) ›	0.53	29.0	3.21e-01	73.4%	65.6%
3bk5A00	2.50.20.10	Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX	0.51	36.0	2.98e-01	72.6%	91.9%
2ebfX01	3.10.670.10	Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei.	0.51	37.0	3.22e-01	75.0%	87.0%
2hzgB01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.51	36.0	3.46e-01	73.4%	81.8%
1r0mA01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.50	39.0	3.89e-01	96.8%	79.2%
4g29A00	3.10.670.10	Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei.	0.50	38.0	3.47e-01	79.8%	63.3%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5075171	10.4.1.0 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain	0.56	32.0	3.54e-01	77.4%	70.5%
5041017	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	34.0	3.93e-01	74.2%	92.2%
7410	219.1.1.64 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PMT_C3	0.51	37.0	3.22e-01	75.0%	87.5%
2512673	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.50	37.0	3.68e-01	77.4%	74.6%