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hypothetical_protein_pdul_cds_96

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_96__YP_008318667__Pandoravirus_dulcis__1349409

Identity

Accession:: YP_008318667 ↗
Protein ID:: hypothetical_protein_pdul_cds_96
Kingdom:: euk

Quality

67.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-62

PDB

D2 medium residues 63-121

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3b9qA01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.70	52.0	4.53e-01	79.7%	62.9%
5ffdA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.67	53.0	4.18e-01	91.5%	90.5%
1rfmA01	1.10.1530.10	Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel	0.64	51.0	4.03e-01	89.8%	94.7%
2m6uA00	1.20.81.20	Mainly Alpha › Up-down Bundle › Receptor-associated Protein ›	0.63	46.0	4.14e-01	78.0%	82.9%
2i53A02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.63	52.0	4.22e-01	91.5%	64.0%
2zt5A02	3.30.40.230	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 ›	0.63	46.0	4.11e-01	81.4%	56.0%
4h8aB01	1.10.1530.10	Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel	0.62	45.0	4.56e-01	79.7%	91.7%
4u7iA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.56	39.0	3.39e-01	72.9%	69.9%
3aljA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.56	42.0	2.93e-01	84.7%	35.5%
4hfkB00	1.20.120.1620	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.55	49.0	4.11e-01	98.3%	67.3%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4019756	5001.1.1.85 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Fung_rhodopsin	0.77	58.0	3.70e-01	79.7%	31.9%
5026773	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.66	51.0	3.46e-01	83.1%	58.0%
3843294	904.1.1.0 ↗	few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain	0.62	54.0	3.77e-01	96.6%	69.7%
3267437	101.1.1.196 ↗	alpha arrays › HTH › HTH › Three-helical HTH › RWP-RK	0.61	42.0	3.64e-01	71.2%	83.3%
4013272	5001.1.1.85 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Fung_rhodopsin	0.56	46.0	3.37e-01	100.0%	90.8%
5040824	2003.1.1.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains	0.56	40.0	3.05e-01	78.0%	46.1%
3942548	150.1.2.5 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › TENA_THI-4	0.56	42.0	2.95e-01	84.7%	72.4%
4094257	150.3.1.1 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › Hormone_1	0.53	45.0	3.45e-01	93.2%	63.8%
3700107	206.1.2.5 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › CLU	0.51	45.0	2.77e-01	100.0%	90.0%