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hypothetical_protein_pdul_cds_982

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_982__YP_008319909__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008319909 ↗
Protein ID:
hypothetical_protein_pdul_cds_982
Kingdom:
euk

Quality

55.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-96
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_643__YP_009482253__Pandoravirus_neocaledonia__2107708__D95-188
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5idmA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.68 57.0 4.53e-01 91.1% 56.5%
3egiA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 42.0 3.26e-01 72.2% 97.9%
4y4qA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.59 45.0 3.68e-01 82.2% 78.7%
7jt8I01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.56 41.0 3.09e-01 78.9% 43.7%
6g4gD01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.55 44.0 3.30e-01 88.9% 80.7%
2khdA00 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.61e-01 94.4% 59.3%
2g40A00 3.40.50.10420 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NagB/RpiA/CoA transferase-like 0.55 45.0 3.68e-01 88.9% 97.0%
4ubtD00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 44.0 2.98e-01 90.0% 76.3%
2qb7B02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.52 36.0 3.10e-01 71.1% 95.7%
1sesA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 44.0 3.01e-01 93.3% 39.0%
1j5wB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 40.0 3.12e-01 86.7% 39.3%
3fn5B00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.50 43.0 3.58e-01 96.7% 72.4%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1888782 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.68 57.0 4.59e-01 91.1% 58.8%
5025191 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.67 49.0 3.74e-01 77.8% 91.8%
3892155 3914.1.1.2 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.65 44.0 2.56e-01 70.0% 9.9%
3718799 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.65 53.0 4.47e-01 88.9% 58.0%
4980081 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.62 52.0 4.31e-01 90.0% 55.2%
3283806 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.61 52.0 4.49e-01 92.2% 82.9%
3399317 873.1.1.5 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.60 47.0 3.77e-01 85.6% 65.9%
4278027 7528.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I 0.59 43.0 3.54e-01 96.7% 42.4%
4977405 7528.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I 0.58 43.0 3.62e-01 97.8% 46.7%
3999409 7528.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I 0.58 43.0 4.16e-01 84.4% 71.0%
4939735 7528.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I 0.56 42.0 3.53e-01 97.8% 46.7%
3564143 389.1.1.185 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › JAG1 0.56 46.0 3.83e-01 92.2% 57.6%
4304211 3351.1.1.0 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 0.55 38.0 3.56e-01 72.2% 88.7%
4984191 2003.1.7.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › LUD_dom 0.55 45.0 3.35e-01 91.1% 87.1%
3886540 304.151.1.5 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › JAG1 0.52 46.0 4.03e-01 100.0% 70.7%
3614788 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.51 36.0 2.48e-01 74.4% 96.1%
1489443 7581.1.1.6 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_C 0.51 38.0 3.17e-01 80.0% 100.0%
3497072 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.51 37.0 3.46e-01 75.6% 79.1%
3611119 719.1.1.4 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › SAS-6_N 0.51 36.0 3.14e-01 73.3% 85.2%
4003241 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.51 35.0 2.85e-01 72.2% 58.4%
D2 high residues 132-230
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_643__YP_009482253__Pandoravirus_neocaledonia__2107708__D95-188
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7n0eB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.61 49.0 4.57e-01 87.9% 69.7%
4pl9A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.60 48.0 4.19e-01 88.9% 56.7%
4d53A00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.59 49.0 4.48e-01 90.9% 94.7%
6blkC00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.59 44.0 3.82e-01 87.9% 50.0%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.58 41.0 3.03e-01 72.7% 50.2%
4g2uA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.56 48.0 3.88e-01 99.0% 79.0%
1vq0A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.53 38.0 2.86e-01 73.7% 44.2%
3qkbA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.53 37.0 3.78e-01 72.7% 90.4%
3rkxA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 42.0 3.40e-01 90.9% 91.0%
4uqwB00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.51 42.0 3.62e-01 89.9% 91.7%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.51 44.0 4.00e-01 100.0% 73.6%
4cp8E00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.50 43.0 2.90e-01 100.0% 87.1%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3712894 273.1.1.2 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.64 53.0 4.79e-01 90.9% 95.7%
4946456 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.64 50.0 4.35e-01 87.9% 54.7%
4027274 273.1.1.2 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.63 52.0 4.63e-01 91.9% 96.6%
3499933 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.62 52.0 4.77e-01 91.9% 93.8%
3491412 273.1.1.2 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.62 52.0 4.47e-01 90.9% 98.1%
3532103 273.1.1.2 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.61 52.0 4.62e-01 91.9% 95.0%
3997566 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.61 53.0 4.39e-01 98.0% 80.6%
4028720 273.1.1.2 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.61 51.0 4.69e-01 91.9% 96.2%
3503998 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.60 45.0 3.86e-01 78.8% 75.0%
3758929 273.1.1.2 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.60 50.0 4.64e-01 91.9% 96.2%
3930029 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.60 50.0 4.43e-01 91.9% 91.0%
3235186 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.60 48.0 4.75e-01 88.9% 100.0%
1697211 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.59 49.0 4.48e-01 90.9% 94.7%
3617194 864.1.1.0 ↗ a+b two layers › DLC › DLC › DLC 0.59 50.0 4.58e-01 91.9% 92.3%
4000828 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.59 52.0 4.16e-01 100.0% 80.5%
3273660 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.59 51.0 4.19e-01 98.0% 98.4%
3997559 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.59 50.0 3.91e-01 98.0% 74.2%
3992937 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.58 49.0 4.26e-01 98.0% 95.2%
4001525 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.58 50.0 3.51e-01 100.0% 88.9%
3587057 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.57 50.0 4.30e-01 100.0% 60.6%
3991738 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.57 49.0 3.94e-01 99.0% 83.4%
4001475 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.56 49.0 3.94e-01 100.0% 80.0%
3234528 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.55 47.0 3.92e-01 98.0% 80.8%
3931469 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 39.0 2.77e-01 77.8% 31.7%
3601271 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.53 45.0 3.21e-01 93.9% 93.1%
3714169 2003.1.5.79 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.53 45.0 3.15e-01 94.9% 90.7%
3194447 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 43.0 2.93e-01 87.9% 28.9%
D3 high residues 253-337
PDB
D4 medium residues 387-487
PDB