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hypothetical_protein_pdul_cds_990
Euk-VirPandoravirus_dulcis
hypothetical_protein_pdul_cds_990__YP_008319920__Pandoravirus_dulcis__1349409
Identity
- Accession:
- YP_008319920 ↗
- Protein ID:
- hypothetical_protein_pdul_cds_990
- Kingdom:
- euk
Quality
65.1
mean pLDDT
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 44-71_107-149_270-283_472-516
D2
medium
residues 72-106_284-349
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8c0zE01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.66 | 48.0 | 4.40e-01 | 95.0% | 58.0% |
| 1gteA04 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.62 | 49.0 | 4.23e-01 | 95.0% | 54.9% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.58 | 34.0 | 3.24e-01 | 88.1% | 47.9% |
| 1jkfA03 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.57 | 32.0 | 3.98e-01 | 88.1% | 93.3% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 30.0 | 3.16e-01 | 90.1% | 54.7% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 32.0 | 2.40e-01 | 88.1% | 23.5% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.51 | 25.0 | 3.38e-01 | 80.2% | 100.0% |
| 6yfiB01 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.51 | 29.0 | 2.61e-01 | 75.2% | 40.7% |
| 2iw3A05 | 2.40.50.990 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 34.0 | 3.38e-01 | 94.1% | 64.2% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3254166 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.68 | 63.0 | 3.98e-01 | 100.0% | 53.2% |
| 3872696 | 922.1.1.0 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat | 0.65 | 31.0 | 4.16e-01 | 80.2% | 97.8% |
| 3313853 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.63 | 57.0 | 3.76e-01 | 100.0% | 34.2% |
| 3400681 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.62 | 49.0 | 4.22e-01 | 96.0% | 53.1% |
| 3528890 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 31.0 | 2.70e-01 | 82.2% | 29.7% |
| 3361070 | 2003.1.2.102 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 | 0.62 | 57.0 | 3.73e-01 | 100.0% | 33.8% |
| 4030418 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.62 | 34.0 | 3.09e-01 | 88.1% | 37.9% |
| 3421079 | 2003.1.2.102 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 | 0.61 | 56.0 | 4.04e-01 | 100.0% | 43.9% |
| 4645412 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.61 | 56.0 | 3.58e-01 | 100.0% | 33.2% |
| 3911517 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.61 | 49.0 | 3.92e-01 | 97.0% | 43.5% |
| 3463184 | 2003.1.2.65 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Pyr_redox_3 | 0.61 | 55.0 | 3.89e-01 | 98.0% | 49.0% |
| 3959235 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.59 | 48.0 | 3.60e-01 | 89.1% | 73.6% |
| 5025889 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.56 | 48.0 | 4.18e-01 | 96.0% | 60.6% |
| 3303191 | 5.1.5.85 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 | 0.53 | 39.0 | 2.69e-01 | 80.2% | 57.2% |
| 3486075 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 30.0 | 3.28e-01 | 77.2% | 68.8% |
| 4173092 | 222.2.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Insertion domain in thioesterase › Insertion domain in thioesterase › FAS1_thioest_ins | 0.52 | 44.0 | 4.43e-01 | 93.1% | 94.3% |
| 4413972 | 5.1.7.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 | 0.51 | 36.0 | 2.30e-01 | 73.3% | 35.4% |
| 3760460 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 31.0 | 3.66e-01 | 84.2% | 89.7% |
| 4022815 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 38.0 | 3.11e-01 | 88.1% | 42.9% |
D3
medium
residues 150-170_222-232_350-471
D4
medium
residues 171-221_233-269