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hypothetical_protein_pdul_cds_998

Euk-Vir

Pandoravirus_dulcis

hypothetical_protein_pdul_cds_998__YP_008319929__Pandoravirus_dulcis__1349409

Identity

Accession:
YP_008319929 ↗
Protein ID:
hypothetical_protein_pdul_cds_998
Kingdom:
euk

Quality

74.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_dulcis

TaxID: 1349409

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-195
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_919__YP_008438116__Pandoravirus_salinus__1349410__D11-153
D2 high residues 223-366
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp1591__YP_009120560__Pandoravirus_inopinatum__1605721__D181-198_210-259_277-315_339-420
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 30.0 4.00e-01 100.0% 82.1%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 30.0 3.97e-01 100.0% 83.5%
5tdeA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.62 38.0 3.81e-01 100.0% 58.4%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 29.0 3.87e-01 95.8% 84.0%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 29.0 3.99e-01 96.5% 91.2%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 29.0 3.70e-01 96.5% 76.8%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 27.0 4.07e-01 93.8% 100.0%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 27.0 3.67e-01 99.3% 81.1%
3jb9H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 28.0 3.71e-01 95.1% 82.9%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 26.0 3.72e-01 95.1% 90.8%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 27.0 3.65e-01 95.1% 84.4%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 26.0 3.51e-01 95.1% 82.7%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.55 24.0 3.17e-01 97.9% 74.0%
1nnvA01 3.10.450.140 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative 0.55 25.0 3.01e-01 84.0% 64.0%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 23.0 3.13e-01 90.3% 74.3%
3lm3A02 3.30.1120.110 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 33.0 3.79e-01 94.4% 83.2%
2wbnA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.52 46.0 4.31e-01 97.2% 86.0%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 21.0 3.06e-01 70.1% 88.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3809146 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.65 37.0 4.59e-01 95.8% 90.0%
4015654 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 29.0 4.06e-01 95.1% 87.1%
4024769 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.63 25.0 3.64e-01 83.3% 80.0%
409204 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.62 30.0 3.56e-01 100.0% 64.1%
3421408 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.62 28.0 2.90e-01 100.0% 44.4%
3712122 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.62 28.0 3.58e-01 95.1% 70.6%
3593314 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 28.0 3.67e-01 95.8% 76.2%
3621457 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.60 28.0 3.91e-01 96.5% 90.0%
150686 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.60 27.0 3.90e-01 95.1% 98.3%
3277139 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.59 29.0 3.26e-01 97.2% 58.3%
4990442 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.58 28.0 3.57e-01 95.8% 78.8%
478 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.56 26.0 3.51e-01 95.1% 82.7%
4932286 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.56 27.0 3.58e-01 100.0% 86.3%
4164250 3604.1.1.1 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.55 26.0 3.71e-01 90.3% 98.5%
3911065 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 27.0 3.49e-01 99.3% 83.7%
3801721 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.54 35.0 4.20e-01 95.8% 98.9%
3571568 9.15.1.1 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD 0.51 36.0 3.65e-01 96.5% 71.0%
5043415 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 39.0 4.26e-01 96.5% 95.8%
3929202 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.50 34.0 3.94e-01 86.8% 94.3%
3719860 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 27.0 3.00e-01 100.0% 62.6%
D3 high residues 376-481
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_529__YP_009482139__Pandoravirus_neocaledonia__2107708__D177-292