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hypothetical_protein_pmac_cds_10

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_10__YP_009480694__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009480694 ↗
Protein ID:
hypothetical_protein_pmac_cds_10
Kingdom:
euk

Quality

61.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 29-78_115-154
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.66 53.0 5.26e-01 90.0% 83.0%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.65 45.0 4.85e-01 81.1% 85.3%
3hnrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 52.0 4.03e-01 85.6% 89.1%
3g7uA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 56.0 4.46e-01 96.7% 85.2%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.64 50.0 5.26e-01 90.0% 93.9%
3zigA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.63 49.0 5.08e-01 86.7% 92.7%
3dp7A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 49.0 4.04e-01 84.4% 83.5%
2ln3A00 3.30.110.140 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.63 48.0 4.99e-01 86.7% 90.4%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.62 48.0 4.96e-01 83.3% 100.0%
7dl8C01 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.62 45.0 4.54e-01 76.7% 78.7%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.62 49.0 4.98e-01 85.6% 100.0%
3dlcA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 48.0 3.68e-01 86.7% 84.0%
1qzzA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 47.0 3.89e-01 85.6% 81.1%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.59 47.0 4.66e-01 85.6% 90.3%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 41.0 3.81e-01 74.4% 84.5%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 38.0 3.90e-01 81.1% 69.3%
3fzgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 44.0 3.50e-01 84.4% 80.1%
2e5aA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 49.0 3.72e-01 100.0% 55.5%
5t8uB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 48.0 3.59e-01 98.9% 73.8%
5tvfD00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.56 44.0 3.17e-01 85.6% 83.7%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 39.0 4.25e-01 83.3% 91.7%
4fppA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 42.0 3.67e-01 82.2% 82.5%
1vqzA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 47.0 3.56e-01 100.0% 74.8%
2d9iA00 3.30.1370.110 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.54 42.0 4.16e-01 83.3% 93.8%
2hnkA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 41.0 3.12e-01 95.6% 32.8%
3hr6A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 3.69e-01 90.0% 86.0%
6vfqA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.54 37.0 3.51e-01 78.9% 57.9%
2vo8A00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.69e-01 84.4% 59.3%
2p0lA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 47.0 3.41e-01 100.0% 78.6%
4lubB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 44.0 4.27e-01 93.3% 97.0%
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.52 39.0 3.67e-01 78.9% 85.1%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 30.0 3.09e-01 82.2% 60.0%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.51 44.0 3.69e-01 97.8% 81.6%
1htwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 43.0 3.61e-01 95.6% 79.1%
2w42B02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 42.0 3.21e-01 94.4% 74.0%
1xkpB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.50 37.0 3.38e-01 84.4% 57.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4121833 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.69 52.0 5.32e-01 85.6% 83.5%
4989614 328.5.1.0 ↗ a+b two layers › IF3-like › SirA-like › SirA-like 0.69 51.0 5.60e-01 85.6% 100.0%
3609798 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.68 52.0 4.75e-01 80.0% 86.1%
3190610 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.66 49.0 4.64e-01 78.9% 71.8%
4087039 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.66 49.0 5.16e-01 77.8% 90.0%
3411130 328.7.1.1 ↗ a+b two layers › IF3-like › Smr domain › Smr domain › Smr 0.65 51.0 4.71e-01 82.2% 80.0%
5062113 328.9.1.1 ↗ a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.65 52.0 5.42e-01 93.3% 95.2%
3737998 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.65 46.0 4.72e-01 78.9% 78.8%
3454258 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.63 48.0 4.91e-01 85.6% 84.7%
5016597 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.63 47.0 4.51e-01 78.9% 67.6%
3253272 2003.1.5.54 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_10 0.63 49.0 3.39e-01 85.6% 65.7%
4932013 328.9.1.1 ↗ a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF 0.62 53.0 5.48e-01 100.0% 100.0%
4928435 2003.1.5.14 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 0.60 47.0 3.69e-01 85.6% 80.8%
4497067 328.3.1.2 ↗ a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › mIF3 0.59 46.0 4.63e-01 85.6% 93.3%
4182510 812.1.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.57 36.0 3.66e-01 85.6% 64.4%
5029360 256.1.1.1 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.55 31.0 3.54e-01 82.2% 75.4%
5064883 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.55 42.0 3.23e-01 84.4% 47.6%
3511363 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 3.71e-01 81.1% 62.7%
3306726 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 4.43e-01 83.3% 96.2%
3880055 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.57e-01 78.9% 60.0%
4023676 3156.3.1.0 ↗ beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family 0.53 41.0 3.60e-01 84.4% 66.4%
3973743 101.1.2.849 ↗ alpha arrays › HTH › HTH › winged helix domain › GDH_ACT2 0.52 37.0 3.71e-01 80.0% 70.5%
3266048 213.1.1.26 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_4 0.52 39.0 3.18e-01 82.2% 51.9%
3703948 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.61e-01 77.8% 65.7%
3281355 304.12.1.12 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › GDH_ACT2 0.51 37.0 3.53e-01 80.0% 65.7%
D2 medium residues 275-349
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp0313__YP_009119282__Pandoravirus_inopinatum__1605721__D306-364
D3 medium residues 426-466
PDB