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hypothetical_protein_pmac_cds_15

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_15__YP_009480699__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009480699 ↗
Protein ID:
hypothetical_protein_pmac_cds_15
Kingdom:
euk

Quality

61.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 82-191
PDB
Domain cluster: rep: F-box_domain_protein__YP_009120021__Pandoravirus_inopinatum__1605721__D14-160
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1te4A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 33.0 3.61e-01 90.0% 66.3%
6whbA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 46.0 3.47e-01 100.0% 61.7%
7dl9B02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.51 36.0 3.01e-01 72.7% 87.2%
1ks8A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.51 43.0 2.99e-01 97.3% 35.8%
3onkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 40.0 3.74e-01 86.4% 74.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3694013 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.62 44.0 4.67e-01 83.6% 81.0%
3878199 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.56 33.0 2.99e-01 74.5% 40.7%
4012559 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.53 36.0 4.04e-01 97.3% 91.8%
3216798 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.50 35.0 3.13e-01 73.6% 63.0%
D2 medium residues 192-221_253-366
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4leuA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.69 59.0 5.47e-01 99.3% 72.5%
5mdtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 50.0 4.94e-01 84.0% 90.8%
2yvyA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.61 46.0 4.87e-01 98.6% 90.4%
1sqmA04 1.25.40.320 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Peptidase M1, leukotriene A4 hydrolase/aminopeptidase C-terminal domain 0.60 50.0 4.97e-01 99.3% 86.6%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 53.0 4.31e-01 100.0% 67.5%
2w3cA02 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.57 49.0 3.94e-01 94.4% 67.5%
1yz5B00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.56 45.0 3.90e-01 87.5% 87.8%
3qmlD00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 49.0 4.04e-01 100.0% 55.3%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.53 43.0 4.26e-01 88.2% 92.9%
3fflA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 42.0 4.40e-01 91.0% 97.6%
2qfcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 41.0 3.40e-01 86.1% 47.5%
2hr2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 41.0 4.08e-01 88.2% 93.6%
5tgzA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 36.0 2.86e-01 73.6% 48.6%
3sz7A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 42.0 4.17e-01 97.2% 86.8%
2fbnA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 42.0 4.13e-01 90.3% 85.6%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3414892 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.68 58.0 5.49e-01 95.8% 77.1%
3271428 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.65 59.0 4.65e-01 100.0% 56.0%
3254743 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.64 53.0 4.53e-01 86.8% 60.4%
3661217 109.4.1.1334 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, PPR_long 0.64 52.0 4.93e-01 98.6% 72.9%
3805550 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.63 51.0 4.93e-01 98.6% 77.0%
3301952 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.62 50.0 4.48e-01 98.6% 59.5%
3421022 109.4.1.1279 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long, TPR_24 0.62 50.0 4.13e-01 95.8% 47.5%
3360214 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.62 56.0 4.29e-01 100.0% 47.6%
3668275 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.61 51.0 4.75e-01 97.9% 71.4%
3433875 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.60 47.0 4.67e-01 95.8% 78.7%
4207849 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 53.0 5.22e-01 99.3% 91.8%
3828010 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.60 49.0 4.71e-01 97.9% 77.0%
3833516 109.4.1.1261 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.60 49.0 3.87e-01 97.9% 42.3%
3320830 109.4.1.1146 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB 0.59 53.0 4.12e-01 98.6% 46.9%
3808793 109.4.1.1334 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, PPR_long 0.59 49.0 4.89e-01 98.6% 88.3%
3813647 109.4.1.1282 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 0.58 48.0 4.35e-01 95.8% 64.5%
4240434 109.4.1.470 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS2 0.58 50.0 4.51e-01 97.2% 94.8%
3817401 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.58 48.0 4.35e-01 95.8% 66.2%
3194395 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 47.0 3.29e-01 88.2% 35.1%
3318145 109.4.1.1521 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif 0.56 45.0 3.74e-01 97.2% 47.7%
3355418 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.56 49.0 3.58e-01 97.9% 39.3%
3791800 109.4.1.2555 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf, HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N 0.56 50.0 3.16e-01 100.0% 22.1%
None — 0.55 47.0 4.52e-01 98.6% 81.2%
3403107 109.4.1.890 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C 0.55 49.0 3.95e-01 100.0% 59.0%
3625400 109.4.1.888 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_N 0.54 47.0 4.39e-01 98.6% 76.7%
3811508 109.4.1.1999 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_12, TPR_16 0.54 42.0 3.91e-01 87.5% 64.1%
None — 0.54 48.0 3.87e-01 100.0% 50.5%
3621853 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 41.0 3.89e-01 97.2% 70.0%
3631318 109.4.1.98 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 44.0 4.09e-01 96.5% 71.9%
3606341 109.4.1.1433 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_7, TPR_8, TPR_12 0.50 44.0 4.14e-01 97.2% 83.4%
D3 medium residues 507-565
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.75 58.0 4.82e-01 100.0% 48.5%
2ouwB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.69 56.0 4.26e-01 100.0% 39.0%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.66 53.0 4.81e-01 100.0% 63.9%
3rgoA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.59 48.0 3.62e-01 100.0% 35.0%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.62e-01 93.2% 95.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988487 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.82 44.0 3.94e-01 71.2% 39.2%
3777031 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.66 56.0 4.03e-01 98.3% 34.8%
3507564 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.65 49.0 3.59e-01 98.3% 31.0%
3960205 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.56 48.0 4.44e-01 100.0% 73.8%
3930036 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.55 48.0 4.68e-01 100.0% 96.9%
3334056 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.66e-01 76.3% 96.4%
3783191 223.2.1.9 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.51 36.0 2.48e-01 78.0% 22.0%
D4 medium residues 566-630_647-662
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jj6B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 39.0 3.70e-01 72.8% 74.0%
2v0cA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.55 47.0 3.86e-01 98.8% 80.5%
3tviA01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.55 39.0 2.73e-01 75.3% 45.6%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 41.0 3.49e-01 80.2% 77.4%
1kn1B00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.53 36.0 2.95e-01 71.6% 46.6%
7ccmB01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.52 41.0 3.45e-01 86.4% 84.6%
2xryA03 1.10.579.10 Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.51 41.0 3.42e-01 86.4% 70.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4448417 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 62.0 4.02e-01 95.1% 33.7%
3607741 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 53.0 3.88e-01 100.0% 62.2%
3309822 109.27.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 0.54 40.0 3.08e-01 80.2% 40.5%
3178763 109.58.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C 0.53 38.0 3.50e-01 77.8% 86.1%
3723515 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.52 33.0 3.68e-01 71.6% 81.5%
4562846 377.1.1.11 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C 0.51 35.0 2.94e-01 72.8% 71.0%
3601072 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.51 35.0 2.90e-01 70.4% 50.7%
D5 medium residues 631-646_663-723
PDB
D6 medium residues 724-793
PDB