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hypothetical_protein_pmac_cds_204
Euk-VirPandoravirus_macleodensis
hypothetical_protein_pmac_cds_204__YP_009480888__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009480888 ↗
- Protein ID:
- hypothetical_protein_pmac_cds_204
- Kingdom:
- euk
Quality
71.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 38-131
D2
medium
residues 142-242_373-389
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qw6D00 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.54 | 29.0 | 3.31e-01 | 80.5% | 69.8% |
| 3fyaB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.53 | 27.0 | 3.31e-01 | 85.6% | 75.3% |
| 2yyiA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.50 | 36.0 | 3.05e-01 | 76.3% | 90.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3928495 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.62 | 29.0 | 3.22e-01 | 83.1% | 52.6% |
| 1923869 | 4953.1.1.2 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ADSL_C | 0.52 | 32.0 | 3.12e-01 | 81.4% | 53.0% |
| 3729702 | 206.1.1.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 | 0.51 | 37.0 | 2.57e-01 | 78.8% | 22.6% |
| 3696106 | 3621.1.1.0 ↗ | alpha arrays › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain | 0.50 | 38.0 | 3.68e-01 | 80.5% | 88.1% |
D3
medium
residues 243-372
Domain cluster:
rep: hypothetical_protein_pmac_cds_36__YP_009480720__Pandoravirus_macleodensis__2107707__D324-473
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3v69B00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.55 | 33.0 | 3.52e-01 | 99.2% | 67.9% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3225764 | 840.1.1.0 ↗ | a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit | 0.64 | 31.0 | 4.27e-01 | 99.2% | 98.3% |
| 4964696 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.60 | 25.0 | 2.72e-01 | 100.0% | 43.5% |
| 3703071 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.55 | 25.0 | 2.98e-01 | 80.0% | 60.0% |