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hypothetical_protein_pmac_cds_23

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_23__YP_009480707__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009480707 ↗
Protein ID:
hypothetical_protein_pmac_cds_23
Kingdom:
euk

Quality

37.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 100-157_286-308
PDB
D2 medium residues 422-484_525-668_688-706
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h37A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.73 46.0 5.65e-01 70.8% 97.9%
1miwA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.69 42.0 5.29e-01 71.2% 100.0%
1ou5A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.66 41.0 5.10e-01 72.1% 100.0%
2o5aA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.64 31.0 4.45e-01 74.8% 100.0%
3bt3A02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.57 18.0 3.28e-01 92.9% 100.0%
3n2qA02 3.30.300.190 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.54 28.0 3.77e-01 96.5% 94.8%
2i7rA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 26.0 3.51e-01 95.1% 91.2%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3268750 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.81 62.0 7.02e-01 85.0% 100.0%
3273326 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.81 66.0 6.22e-01 83.2% 81.5%
3252046 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.80 66.0 6.50e-01 84.1% 91.1%
3272557 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.80 62.0 6.93e-01 81.4% 99.4%
3250627 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.79 67.0 6.34e-01 90.7% 75.1%
3274698 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.79 65.0 6.34e-01 84.1% 99.2%
3269142 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.79 62.0 6.72e-01 81.4% 100.0%
4495995 316.1.1.1 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.78 46.0 5.99e-01 70.8% 100.0%
3632181 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.77 55.0 6.13e-01 73.0% 95.7%
3276222 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.76 54.0 5.39e-01 72.1% 100.0%
3273503 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.72 66.0 6.61e-01 94.2% 95.1%
3195886 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.71 68.0 5.69e-01 100.0% 73.6%
3839787 316.1.1.1 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.68 44.0 5.40e-01 71.7% 100.0%
4243407 316.1.1.5 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS 0.66 34.0 4.61e-01 80.5% 95.7%
3471756 316.1.1.40 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_7 0.66 47.0 4.94e-01 72.6% 98.5%
3755044 316.1.1.40 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_7 0.64 46.0 4.71e-01 72.6% 98.1%
4555762 316.1.1.1 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.61 37.0 4.70e-01 71.7% 100.0%
3585073 316.1.1.1 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol 0.61 43.0 4.95e-01 73.5% 100.0%
4669519 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.60 35.0 4.49e-01 77.4% 97.8%
5045944 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.58 26.0 3.66e-01 76.1% 87.6%
4481605 316.1.1.11 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB 0.56 36.0 4.29e-01 80.5% 92.9%
358135 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.56 24.0 3.64e-01 87.2% 96.7%
3839079 316.1.1.18 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.55 44.0 4.34e-01 85.8% 80.0%
2755458 316.1.1.26 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › SMODS 0.50 38.0 3.99e-01 78.8% 89.5%
D3 medium residues 760-819
PDB