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hypothetical_protein_pmac_cds_268
Euk-VirPandoravirus_macleodensis
hypothetical_protein_pmac_cds_268__YP_009480952__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009480952 ↗
- Protein ID:
- hypothetical_protein_pmac_cds_268
- Kingdom:
- euk
Quality
59.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 79-275
D2
high
residues 280-389
D3
medium
residues 4-78
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3i57A01 | 3.10.20.470 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.61 | 43.0 | 4.32e-01 | 74.7% | 96.0% |
| 2kdvA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.59 | 47.0 | 3.73e-01 | 88.0% | 95.7% |
| 4hfqA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.59 | 42.0 | 3.52e-01 | 77.3% | 61.2% |
| 1wi0A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 43.0 | 3.83e-01 | 80.0% | 87.6% |
| 4dywA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.58 | 47.0 | 3.95e-01 | 89.3% | 99.2% |
| 3e57A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.58 | 47.0 | 3.58e-01 | 89.3% | 97.8% |
| 4dbgA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 42.0 | 4.16e-01 | 78.7% | 96.3% |
| 4hppA01 | 3.10.20.70 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain | 0.57 | 41.0 | 3.84e-01 | 78.7% | 93.1% |
| 2dyoA03 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 40.0 | 3.89e-01 | 76.0% | 96.4% |
| 5zliA01 | 3.10.20.70 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain | 0.55 | 42.0 | 3.79e-01 | 82.7% | 85.8% |
| 1xkhA01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.55 | 40.0 | 3.67e-01 | 78.7% | 62.5% |
| 1wiaA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 39.0 | 4.05e-01 | 76.0% | 100.0% |
| 6scxC01 | 3.90.79.20 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › | 0.53 | 45.0 | 3.51e-01 | 96.0% | 88.4% |
| 2bw2A01 | 3.10.20.420 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain | 0.53 | 37.0 | 4.14e-01 | 76.0% | 98.2% |
| 1wghA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 38.0 | 3.72e-01 | 76.0% | 98.8% |
| 2dzkA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 38.0 | 3.77e-01 | 76.0% | 100.0% |
| 6djwA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 36.0 | 3.75e-01 | 76.0% | 100.0% |
| 7pyvC02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 36.0 | 3.72e-01 | 73.3% | 100.0% |
| 2be3B01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.51 | 35.0 | 3.02e-01 | 74.7% | 85.2% |
| 4bouA00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.51 | 30.0 | 2.49e-01 | 92.0% | 31.9% |
| 2dziA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 37.0 | 3.67e-01 | 78.7% | 91.4% |
| 2gbmA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 36.0 | 3.54e-01 | 74.7% | 97.5% |
| 2j58A01 | 3.10.560.10 | Alpha Beta › Roll › Outer membrane lipoprotein wza fold like › Outer membrane lipoprotein wza domain like | 0.51 | 41.0 | 3.64e-01 | 89.3% | 88.1% |
| 1ttnA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 37.0 | 3.79e-01 | 78.7% | 100.0% |
| 5e6pA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 37.0 | 3.34e-01 | 78.7% | 91.4% |
| 3rt3B01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 37.0 | 3.74e-01 | 78.7% | 100.0% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3289397 | 80.1.1.2 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › DUF779 | 0.65 | 55.0 | 4.53e-01 | 92.0% | 79.1% |
| 4032516 | 221.1.1.17 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C | 0.64 | 46.0 | 4.20e-01 | 76.0% | 98.0% |
| 3428418 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.63 | 49.0 | 3.56e-01 | 85.3% | 95.5% |
| 3631863 | 80.1.1.0 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain | 0.62 | 50.0 | 4.24e-01 | 90.7% | 78.5% |
| 4159942 | 80.1.1.1 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn | 0.61 | 50.0 | 4.28e-01 | 90.7% | 71.0% |
| 3601248 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 44.0 | 4.03e-01 | 77.3% | 98.0% |
| 3702709 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 45.0 | 4.24e-01 | 78.7% | 97.8% |
| 4169587 | 239.1.1.2 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_S6e | 0.60 | 45.0 | 3.77e-01 | 80.0% | 87.7% |
| 1101007 | 3114.1.1.2 ↗ | beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › MucBP_2 | 0.60 | 44.0 | 4.35e-01 | 77.3% | 94.9% |
| 3605551 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.60 | 45.0 | 4.27e-01 | 80.0% | 100.0% |
| 3695700 | 80.1.1.1 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn | 0.60 | 48.0 | 3.98e-01 | 88.0% | 67.4% |
| 4947785 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.59 | 44.0 | 4.62e-01 | 78.7% | 88.4% |
| 4970425 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.59 | 42.0 | 4.46e-01 | 76.0% | 87.7% |
| 5028192 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.58 | 42.0 | 4.45e-01 | 78.7% | 83.8% |
| 5027673 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.58 | 42.0 | 3.41e-01 | 78.7% | 71.6% |
| 1159187 | 221.1.1.24 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ATG5_UblB | 0.57 | 42.0 | 3.76e-01 | 78.7% | 78.3% |
| 4995489 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 45.0 | 4.06e-01 | 88.0% | 100.0% |
| 4937324 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.56 | 44.0 | 3.67e-01 | 85.3% | 100.0% |
| 3180908 | 221.4.1.24 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX, DUF4743 | 0.56 | 46.0 | 3.11e-01 | 97.3% | 55.8% |
| 4009891 | 311.1.1.1 ↗ | a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › PTS_EIIA_2 | 0.56 | 35.0 | 2.83e-01 | 80.0% | 33.1% |
| 5042794 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 44.0 | 3.64e-01 | 88.0% | 77.5% |
| 2557339 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.54 | 41.0 | 3.74e-01 | 84.0% | 80.6% |
| 4977805 | 221.1.1.50 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 | 0.54 | 43.0 | 4.02e-01 | 86.7% | 100.0% |
| 3946561 | 311.1.1.1 ↗ | a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › PTS_EIIA_2 | 0.54 | 34.0 | 2.72e-01 | 78.7% | 31.6% |
| 3592612 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 38.0 | 3.73e-01 | 74.7% | 100.0% |
| 3789668 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 39.0 | 3.31e-01 | 77.3% | 75.0% |
| 5040460 | 239.1.1.6 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 | 0.53 | 38.0 | 3.90e-01 | 78.7% | 78.4% |
| 5058018 | 331.5.1.1 ↗ | a+b two layers › TBP-like › TT1751-like › TT1751-like › DUF302 | 0.52 | 37.0 | 3.27e-01 | 77.3% | 56.5% |
| 3448848 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 38.0 | 3.80e-01 | 78.7% | 97.5% |
| 3322134 | 221.1.1.44 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD | 0.52 | 40.0 | 3.94e-01 | 82.7% | 100.0% |
| 4018064 | 221.1.1.44 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD | 0.51 | 38.0 | 3.77e-01 | 80.0% | 97.5% |
| 3178184 | 2004.1.1.212 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Microtub_bd | 0.51 | 41.0 | 2.82e-01 | 94.7% | 40.6% |
| 3194063 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.51 | 36.0 | 2.99e-01 | 77.3% | 41.5% |
| 3768786 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 37.0 | 3.69e-01 | 78.7% | 97.5% |
| 3716002 | 508.1.1.1 ↗ | a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › PIH1 | 0.50 | 38.0 | 3.11e-01 | 78.7% | 50.0% |
| 3737707 | 7080.1.1.0 ↗ | beta sandwiches › SARAF luminal domain › SARAF luminal domain › SARAF luminal domain | 0.50 | 37.0 | 3.41e-01 | 82.7% | 92.4% |
| 5031305 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 31.0 | 3.30e-01 | 77.3% | 72.3% |