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hypothetical_protein_pmac_cds_272
Euk-VirPandoravirus_macleodensis
hypothetical_protein_pmac_cds_272__YP_009480956__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009480956 ↗
- Protein ID:
- hypothetical_protein_pmac_cds_272
- Kingdom:
- euk
Quality
71.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-97
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4k22A02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.61 | 42.0 | 4.05e-01 | 100.0% | 62.0% |
| 4i1kA00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.60 | 47.0 | 4.40e-01 | 91.5% | 68.6% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 30.0 | 3.82e-01 | 100.0% | 90.0% |
| 3qwuA01 | 3.10.450.740 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 28.0 | 3.82e-01 | 73.4% | 91.5% |
| 3zn6A02 | 2.60.40.3410 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 40.0 | 4.19e-01 | 100.0% | 78.2% |
| 3orjA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 40.0 | 4.18e-01 | 92.6% | 78.8% |
| 1y9lA00 | 2.40.128.230 | Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM | 0.56 | 43.0 | 4.12e-01 | 83.0% | 98.2% |
| 1x0gA00 | 2.60.300.12 | Mainly Beta › Sandwich › Hypothetical Protein Aq_1857; Chain: A; › HesB-like domain | 0.56 | 49.0 | 4.81e-01 | 97.9% | 94.1% |
| 3bxwA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 33.0 | 4.02e-01 | 74.5% | 100.0% |
| 4xpmB00 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.56 | 34.0 | 3.76e-01 | 70.2% | 82.1% |
| 3qfgA00 | 2.60.40.1240 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 38.0 | 3.38e-01 | 72.3% | 89.7% |
| 4ciuA04 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 40.0 | 4.08e-01 | 86.2% | 78.5% |
| 4mypA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 44.0 | 4.08e-01 | 89.4% | 96.7% |
| 5yh4A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.54 | 44.0 | 3.70e-01 | 93.6% | 97.2% |
| 3sz6A00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 43.0 | 4.04e-01 | 88.3% | 100.0% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.54 | 32.0 | 3.63e-01 | 100.0% | 85.5% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.54 | 33.0 | 3.65e-01 | 91.5% | 76.6% |
| 4ofyD03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.71e-01 | 89.4% | 70.8% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 31.0 | 3.37e-01 | 97.9% | 71.1% |
| 1hxdA03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 25.0 | 3.36e-01 | 98.9% | 95.3% |
| 4fe9A01 | 2.60.40.3640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 42.0 | 3.94e-01 | 88.3% | 76.7% |
| 3nrlA00 | 2.40.10.390 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 34.0 | 3.83e-01 | 96.8% | 92.6% |
| 2bouA02 | 2.10.25.10 | Mainly Beta › Ribbon › Laminin › Laminin | 0.52 | 25.0 | 3.16e-01 | 83.0% | 86.7% |
| 3lpxB02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.52 | 36.0 | 3.64e-01 | 100.0% | 72.3% |
| 5tw4A02 | 2.30.140.20 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain | 0.51 | 32.0 | 3.63e-01 | 97.9% | 85.5% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 36.0 | 3.64e-01 | 96.8% | 75.8% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3617096 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.70 | 43.0 | 4.03e-01 | 100.0% | 50.4% |
| 3172237 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.66 | 40.0 | 3.07e-01 | 100.0% | 25.5% |
| 4948545 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.66 | 38.0 | 3.04e-01 | 100.0% | 27.9% |
| 4163669 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.66 | 37.0 | 3.34e-01 | 100.0% | 39.2% |
| 4992085 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.64 | 43.0 | 4.37e-01 | 100.0% | 71.1% |
| 3304067 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.63 | 51.0 | 5.01e-01 | 90.4% | 82.8% |
| 3340572 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.62 | 48.0 | 4.91e-01 | 87.2% | 87.8% |
| 3974673 | 1.1.7.96 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FIST_C | 0.59 | 43.0 | 4.41e-01 | 100.0% | 80.0% |
| 3802286 | 1.1.11.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain | 0.59 | 48.0 | 4.63e-01 | 91.5% | 79.1% |
| 3924843 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.59 | 41.0 | 3.17e-01 | 100.0% | 32.4% |
| 4182769 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.56 | 28.0 | 3.37e-01 | 93.6% | 71.7% |
| 1954218 | 11.1.1.146 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF3244 | 0.56 | 45.0 | 4.50e-01 | 88.3% | 86.3% |
| 2095618 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 44.0 | 4.41e-01 | 88.3% | 84.4% |
| 3970061 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.54 | 48.0 | 3.65e-01 | 98.9% | 98.6% |
| 3268381 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 41.0 | 4.12e-01 | 89.4% | 81.1% |
| 3846645 | 389.1.1.7 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA | 0.53 | 30.0 | 3.57e-01 | 84.0% | 90.9% |
| 3749060 | 4357.1.1.5 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 | 0.52 | 35.0 | 3.72e-01 | 79.8% | 81.2% |
| 3593071 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 38.0 | 2.59e-01 | 79.8% | 76.8% |
| 5038999 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.52 | 37.0 | 3.01e-01 | 76.6% | 81.0% |
| 3490544 | 5.1.4.147 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N | 0.52 | 46.0 | 3.03e-01 | 100.0% | 24.6% |
| 396031 | 4.22.1.1 ↗ | beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom | 0.50 | 35.0 | 3.49e-01 | 96.8% | 68.3% |