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hypothetical_protein_pmac_cds_273

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_273__YP_009480957__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009480957 ↗
Protein ID:
hypothetical_protein_pmac_cds_273
Kingdom:
euk

Quality

71.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (43 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-96_118-139
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 34.0 4.18e-01 99.2% 81.3%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 42.0 4.11e-01 100.0% 65.4%
4dxkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 38.0 3.81e-01 100.0% 60.8%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.59 24.0 3.77e-01 78.8% 94.0%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 45.0 4.51e-01 80.5% 98.3%
3dg6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 41.0 4.17e-01 94.9% 80.7%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 42.0 4.05e-01 79.7% 92.3%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 40.0 4.04e-01 78.8% 92.7%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 40.0 4.28e-01 78.8% 100.0%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 39.0 4.04e-01 94.9% 80.7%
2i87B02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 34.0 3.10e-01 92.4% 47.2%
3kdgA02 3.30.1370.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain 0.53 35.0 3.86e-01 100.0% 84.0%
3vpbB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 34.0 3.52e-01 92.4% 67.9%
1bqgA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 38.0 3.65e-01 98.3% 64.5%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 41.0 3.73e-01 81.4% 94.2%
1tkkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 40.0 4.06e-01 94.9% 82.6%
3vfcA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 40.0 3.70e-01 100.0% 64.4%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 34.0 3.02e-01 99.2% 45.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3180319 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.72 60.0 4.99e-01 89.0% 64.0%
3888855 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.70 55.0 5.32e-01 92.4% 73.3%
5035423 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.68 31.0 3.66e-01 98.3% 60.0%
3328840 284.1.2.0 ↗ a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.66 38.0 4.39e-01 93.2% 77.6%
146266 295.1.1.8 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3276 0.66 34.0 3.96e-01 94.9% 69.0%
4338151 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.64 34.0 3.23e-01 91.5% 42.1%
3704966 2484.1.1.49 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.64 37.0 4.23e-01 92.4% 75.6%
3514912 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.64 37.0 4.52e-01 92.4% 90.7%
4103142 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.64 38.0 4.47e-01 93.2% 86.3%
3342794 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.63 37.0 4.23e-01 94.1% 76.7%
4534466 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.62 37.0 4.06e-01 93.2% 72.6%
3206632 896.1.1.2 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.61 32.0 3.76e-01 90.7% 70.6%
3427945 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.56 33.0 3.58e-01 94.1% 68.0%
3527704 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.56 41.0 4.27e-01 77.1% 98.2%
3356898 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 44.0 4.03e-01 82.2% 93.3%
3546312 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.56 42.0 4.36e-01 79.7% 99.1%
3279044 2.1.1.314 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27099 0.55 30.0 3.78e-01 86.4% 95.4%
3744517 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 43.0 4.33e-01 83.9% 95.0%
3542914 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 40.0 4.01e-01 77.1% 86.7%
3247792 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.53 39.0 3.89e-01 76.3% 90.8%
3617823 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 30.0 3.35e-01 78.8% 74.2%
3180376 109.3.1.11 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_5 0.50 45.0 3.10e-01 100.0% 29.7%
3564590 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.50 41.0 2.70e-01 90.7% 58.6%
4483150 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.50 45.0 4.11e-01 100.0% 84.4%
D2 medium residues 140-210
PDB
D3 medium residues 211-260_304-368_386-438
PDB
Domain cluster: rep: BTB_domain_containing_protein__YP_008319091__Pandoravirus_dulcis__1349409__D292-403_419-471
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q7nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 42.0 5.05e-01 89.9% 85.5%
4gioA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.70 41.0 5.18e-01 97.6% 100.0%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.68 44.0 5.08e-01 85.1% 88.5%
3mnmA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.68 40.0 4.80e-01 85.1% 86.6%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 39.0 4.67e-01 89.9% 83.9%
2je8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 37.0 4.54e-01 77.4% 86.3%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.64 40.0 4.60e-01 85.1% 85.0%
4cu7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 41.0 4.76e-01 77.4% 88.4%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.64 43.0 4.80e-01 85.1% 87.0%
7uzsX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 38.0 4.51e-01 77.4% 87.0%
2vzsA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 35.0 4.41e-01 88.7% 91.1%
4kkpA02 2.60.40.3880 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 37.0 4.39e-01 79.2% 88.5%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 39.0 4.45e-01 79.2% 87.4%
1wisA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 32.0 3.95e-01 90.5% 86.1%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.58 18.0 3.42e-01 98.2% 97.8%
4iknA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.58 35.0 4.32e-01 77.4% 95.3%
2dmgA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.58 35.0 3.74e-01 80.4% 68.3%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.57 33.0 4.22e-01 88.7% 100.0%
3up1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 25.0 3.11e-01 70.2% 65.4%
1oh4A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 42.0 4.16e-01 98.2% 77.0%
4mkmA01 2.60.40.3930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 38.0 4.05e-01 78.0% 82.2%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 42.0 4.11e-01 98.8% 78.2%
2ed6A01 2.60.40.2770 Mainly Beta › Sandwich › Immunoglobulin-like › WSSV envelope protein-like 0.52 44.0 4.63e-01 90.5% 99.4%
1xo8A00 2.60.40.1820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 4.05e-01 92.3% 85.4%
4r7vA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.90e-01 77.4% 83.2%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3236317 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.73 44.0 5.40e-01 83.9% 95.2%
3796233 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 47.0 5.42e-01 93.5% 92.8%
4972027 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 38.0 4.66e-01 79.2% 83.8%
5039581 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 34.0 4.10e-01 95.8% 72.6%
3762480 11.1.5.83 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › BTBD16_C 0.66 49.0 5.55e-01 94.0% 99.2%
3927415 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 41.0 5.05e-01 78.6% 99.0%
3249979 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.65 52.0 5.66e-01 97.0% 99.3%
3814053 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.65 50.0 5.56e-01 97.6% 100.0%
3938214 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.64 53.0 5.75e-01 88.7% 100.0%
1346834 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.64 41.0 4.77e-01 77.4% 89.2%
3681048 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.64 51.0 5.59e-01 89.9% 100.0%
4538264 11.1.1.44 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.63 38.0 4.52e-01 85.1% 87.7%
3936874 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.63 38.0 4.31e-01 78.0% 77.7%
3593920 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.62 37.0 4.29e-01 97.6% 81.7%
3459780 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.62 51.0 5.49e-01 91.7% 100.0%
5048975 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 37.0 4.61e-01 78.6% 100.0%
3680093 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.61 53.0 5.37e-01 91.7% 97.0%
3480782 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.60 38.0 4.02e-01 97.0% 71.0%
3250796 11.1.1.895 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29538 0.60 40.0 4.46e-01 81.5% 84.4%
3492760 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 42.0 4.23e-01 100.0% 70.6%
3932826 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.59 36.0 3.86e-01 79.2% 70.0%
3471707 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 43.0 4.64e-01 76.8% 88.1%
3805836 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 36.0 3.97e-01 98.2% 77.0%
3251650 10.2.1.84 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Seipin 0.57 43.0 4.51e-01 98.2% 85.2%
3825443 12.6.1.4 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro127M 0.56 37.0 4.39e-01 83.9% 100.0%
3646282 12.6.1.4 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro127M 0.55 37.0 4.39e-01 85.7% 100.0%
3734263 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 4.39e-01 85.1% 89.4%
3519363 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 4.17e-01 89.9% 87.4%
5057529 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 4.08e-01 77.4% 85.0%
3194872 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.54 43.0 3.34e-01 82.7% 43.8%
3805881 11.1.1.37 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › E1_DerP2_DerF2 0.53 36.0 3.90e-01 99.4% 80.7%
4944752 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 33.0 3.75e-01 96.4% 85.8%
3612751 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 39.0 4.27e-01 93.5% 95.0%
5081460 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 39.0 4.00e-01 99.4% 83.1%