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hypothetical_protein_pmac_cds_288

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_288__YP_009480972__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009480972 ↗
Protein ID:
hypothetical_protein_pmac_cds_288
Kingdom:
euk

Quality

38.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-80
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ljcA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 59.0 4.75e-01 77.1% 50.0%
2i7nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.72 46.0 3.54e-01 80.0% 29.7%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.72 55.0 3.64e-01 80.0% 47.5%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.71 56.0 4.77e-01 84.3% 53.2%
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.71 56.0 4.66e-01 87.1% 71.4%
4abxA02 6.10.140.1090 Special › Helix non-globular › Helix Hairpins › 0.64 46.0 4.33e-01 78.6% 60.9%
6tepC02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.64 47.0 3.57e-01 80.0% 38.1%
1mhyG01 1.20.1280.10 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 0.63 43.0 4.35e-01 71.4% 100.0%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4422459 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 55.0 5.55e-01 70.0% 64.3%
3635190 109.3.1.170 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_4 0.84 58.0 3.79e-01 71.4% 26.0%
3639389 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.80 73.0 4.37e-01 100.0% 57.6%
3439829 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 57.0 5.25e-01 75.7% 60.0%
3202188 207.1.1.309 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_15 0.78 72.0 4.27e-01 100.0% 58.9%
4012180 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.78 53.0 4.13e-01 70.0% 49.3%
3309226 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 54.0 4.56e-01 72.9% 46.1%
3446993 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 69.0 4.63e-01 100.0% 94.0%
3733544 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.77 61.0 3.56e-01 84.3% 24.3%
3184851 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 53.0 4.93e-01 71.4% 60.0%
3916304 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.77 55.0 5.07e-01 75.7% 61.1%
3441758 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.77 68.0 4.27e-01 100.0% 65.6%
3319774 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 53.0 5.16e-01 71.4% 93.3%
3457731 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 56.0 5.36e-01 77.1% 68.8%
3848693 145.1.1.37 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › Kelch_2, F-box-like, Kelch_3, Kelch_KLHDC2_KLHL20_DRC7 0.76 59.0 3.66e-01 84.3% 84.8%
3725732 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 52.0 4.97e-01 71.4% 70.0%
3422989 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.75 68.0 4.08e-01 100.0% 51.9%
3678716 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 51.0 5.15e-01 70.0% 70.0%
3698257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 51.0 4.89e-01 70.0% 82.5%
3700073 3403.1.1.9 ↗ alpha bundles › Pre-mRNA-splicing factor PRP9 › Pre-mRNA-splicing factor PRP9 › Pre-mRNA-splicing factor PRP9 › SF3A3 0.75 51.0 3.15e-01 70.0% 13.7%
3829036 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 55.0 4.95e-01 77.1% 97.8%
3835205 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.74 67.0 3.89e-01 100.0% 38.1%
3204329 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 52.0 4.48e-01 72.9% 52.4%
3403835 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.74 54.0 5.06e-01 77.1% 68.2%
4284024 207.1.1.224 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF29466, PF29477 0.74 65.0 4.30e-01 98.6% 78.1%
None — 0.73 66.0 3.86e-01 100.0% 38.1%
3430952 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.72 66.0 3.92e-01 100.0% 47.1%
3437951 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.72 65.0 3.90e-01 100.0% 48.6%
3810013 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 51.0 5.38e-01 74.3% 96.9%
3826138 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.72 62.0 3.75e-01 94.3% 42.2%
3633421 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.71 63.0 3.78e-01 100.0% 49.8%
3469135 207.1.1.134 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.71 63.0 3.96e-01 100.0% 63.4%
3441517 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.70 62.0 3.72e-01 100.0% 51.5%
3833961 207.1.1.183 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_2, FBD, LRR_At5g56370 0.70 60.0 3.69e-01 94.3% 47.1%
3347793 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 53.0 5.17e-01 80.0% 97.3%
3816494 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.70 60.0 3.66e-01 94.3% 44.4%
3464778 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.70 51.0 4.78e-01 77.1% 70.6%
3450388 145.1.1.61 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › LRR_At1g61320_AtMIF1 0.69 61.0 4.03e-01 98.6% 79.0%
3457876 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.69 57.0 4.22e-01 91.4% 92.2%
3834035 145.1.1.26 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › LRR_6, DUF7885 0.68 60.0 3.77e-01 100.0% 59.8%
3714315 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 54.0 4.70e-01 85.7% 93.3%
3443498 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.68 52.0 4.91e-01 82.9% 72.9%
3834480 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.68 60.0 3.79e-01 100.0% 65.3%
3316546 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.68 48.0 5.19e-01 74.3% 86.7%
3312286 207.1.1.134 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, DUF7885 0.67 61.0 3.76e-01 100.0% 61.3%
3726805 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.64 47.0 4.86e-01 78.6% 90.6%
3315665 109.4.1.1146 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB 0.63 49.0 3.91e-01 84.3% 84.3%
5039663 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 40.0 4.00e-01 70.0% 74.7%
3650817 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.58 48.0 3.16e-01 98.6% 73.1%
3396126 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 53.0 3.32e-01 100.0% 98.6%
3660681 207.1.1.246 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box_5 0.57 47.0 3.11e-01 100.0% 68.0%
D2 medium residues 470-629
PDB