←Back to structures

hypothetical_protein_pmac_cds_312

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_312__YP_009480996__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009480996 ↗
Protein ID:
hypothetical_protein_pmac_cds_312
Kingdom:
euk

Quality

62.9 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 73-178
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp1282__YP_009120251__Pandoravirus_inopinatum__1605721__D96-136_150-218
D2 high residues 235-358
PDB
D3 medium residues 179-234
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ix5A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.84 58.0 4.15e-01 73.2% 42.6%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.80 55.0 5.88e-01 73.2% 85.1%
2rt6A00 1.20.1270.340 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.79 58.0 4.73e-01 76.8% 63.3%
3ccgA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.75 57.0 3.95e-01 100.0% 24.9%
2e9fB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.72 50.0 4.15e-01 73.2% 59.4%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.71 50.0 4.41e-01 73.2% 67.1%
5xfaA04 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.71 52.0 4.59e-01 100.0% 52.9%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.70 49.0 4.81e-01 98.2% 67.7%
3pyoY00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 47.0 4.56e-01 75.0% 64.5%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 46.0 4.29e-01 75.0% 56.8%
3mggA02 6.10.140.1580 Special › Helix non-globular › Helix Hairpins › 0.56 42.0 3.69e-01 83.9% 58.4%
1sxjD03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.54 46.0 4.01e-01 100.0% 74.7%
2vm6A00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.54 46.0 3.43e-01 96.4% 52.8%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3592841 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.78 54.0 5.07e-01 75.0% 58.6%
3754639 150.5.1.106 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C 0.78 54.0 4.69e-01 73.2% 63.5%
3356293 192.4.1.22 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › PF26575 0.77 53.0 5.19e-01 71.4% 66.7%
3279544 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.75 52.0 3.26e-01 73.2% 14.2%
3735607 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.74 55.0 4.89e-01 78.6% 56.2%
None — 0.74 51.0 3.53e-01 73.2% 22.6%
3716062 253.1.1.1 ↗ a+b complex topology › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Arginosuc_syn_C 0.73 50.0 3.42e-01 73.2% 20.0%
3560925 604.1.1.20 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA 0.71 51.0 4.17e-01 78.6% 40.9%
3277747 160.1.1.0 ↗ alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase 0.71 48.0 5.30e-01 71.4% 100.0%
3287986 605.8.1.7 ↗ alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › DUF6374 0.70 47.0 4.93e-01 71.4% 82.0%
4107135 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.69 48.0 3.91e-01 71.4% 40.0%
3892891 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.69 61.0 5.46e-01 100.0% 77.5%
3431323 3559.1.1.32 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › THOC7 0.69 49.0 3.76e-01 78.6% 37.9%
4234961 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.68 62.0 4.77e-01 100.0% 49.2%
4178402 1054.1.1.1 ↗ alpha bundles › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arg_decarbox_C 0.68 48.0 3.08e-01 83.9% 16.1%
3589651 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.68 57.0 4.14e-01 100.0% 52.9%
2617397 3078.1.1.1 ↗ extended segments › RNA polymerase PB1 C-terminal fragment › RNA polymerase PB1 C-terminal fragment › RNA polymerase PB1 C-terminal fragment › Flu_PB1 0.68 56.0 4.85e-01 98.2% 59.1%
3941960 5086.1.1.86 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YBHG 0.67 46.0 3.65e-01 73.2% 33.6%
3748949 544.1.1.0 ↗ alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 0.67 47.0 3.77e-01 73.2% 39.4%
4276514 3826.1.1.88 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › CC_BshC 0.67 48.0 4.50e-01 75.0% 65.7%
4145241 6102.1.1.1 ↗ alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA 0.66 52.0 3.73e-01 98.2% 30.0%
4930737 6102.1.1.1 ↗ alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA 0.65 48.0 3.61e-01 98.2% 31.0%
3709302 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.63 58.0 4.38e-01 100.0% 61.6%
3417174 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.63 52.0 3.99e-01 100.0% 49.3%
3826262 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.57 46.0 3.40e-01 91.1% 42.0%
3663500 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.54 47.0 3.45e-01 98.2% 47.6%