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hypothetical_protein_pmac_cds_359

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_359__YP_009481043__Pandoravirus_macleodensis__2107707

Identity

Accession:: YP_009481043 ↗
Protein ID:: hypothetical_protein_pmac_cds_359
Kingdom:: euk

Quality

73.6 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 58-179

PDB

Domain cluster: representative

CATH (18)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3t46A00	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.68	40.0	5.03e-01	79.5%	96.0%
2qffA00	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.63	39.0	4.73e-01	80.3%	100.0%
2icwG01	1.20.120.390	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hla class ii histocompatibility antigen, dr alpha chain. Chain D, domain 1	0.63	49.0	4.89e-01	98.4%	80.6%
2p7vA00	1.20.120.1370	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Regulator of RNA polymerase sigma(70) subunit, domain 4	0.63	45.0	4.24e-01	75.4%	97.4%
3bjdA01	1.10.1240.20	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain	0.61	27.0	3.12e-01	92.6%	55.7%
2uuiA00	1.20.120.550	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain	0.58	49.0	4.51e-01	98.4%	71.6%
3u8vA00	1.20.120.660	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain	0.57	31.0	3.56e-01	76.2%	72.3%
1wvtA00	1.20.1200.10	Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like	0.57	38.0	3.63e-01	74.6%	56.8%
1qv9A02	6.10.140.120	Special › Helix non-globular › Helix Hairpins ›	0.56	45.0	4.82e-01	99.2%	99.0%
1dkxA02	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.56	35.0	4.16e-01	83.6%	96.2%
1nzeA00	1.20.120.290	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle	0.53	35.0	3.69e-01	78.7%	73.2%
4mndA02	1.20.120.1760	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain	0.52	46.0	4.00e-01	97.5%	80.6%
3u9jA00	1.20.120.520	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like	0.52	38.0	3.52e-01	76.2%	96.2%
1qdbA02	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.52	45.0	4.27e-01	93.4%	81.1%
1oahA02	1.20.140.10	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3	0.52	44.0	4.25e-01	93.4%	85.9%
1yuzB01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.51	37.0	3.61e-01	98.4%	67.4%
2p1aB01	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.51	40.0	3.78e-01	83.6%	100.0%
3s0aA00	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.50	33.0	3.42e-01	73.0%	68.1%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4601603	632.15.1.4 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › HSP70	0.66	42.0	4.98e-01	82.0%	96.2%
3636804	3567.1.1.93 ↗	a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › Tcp11	0.63	47.0	4.44e-01	79.5%	75.3%
3742359	3361.1.1.1 ↗	alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › RAC_head	0.61	38.0	4.21e-01	94.3%	78.9%
4295514	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.59	45.0	4.83e-01	89.3%	93.3%
3921524	601.7.1.36 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › UFL1	0.58	40.0	4.06e-01	80.3%	71.7%
3244582	5001.1.1.54 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srbc	0.57	42.0	3.26e-01	77.9%	94.3%
4081657	4177.2.1.0 ↗	alpha duplicates or obligate multimers › BAR/IMD domain-like › Inhibitor of kappaB kinase beta dimerization domain › Inhibitor of kappaB kinase beta dimerization domain	0.56	45.0	3.37e-01	85.2%	75.4%
4990103	601.7.1.2 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN	0.55	41.0	4.15e-01	82.0%	79.2%
3595321	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.55	27.0	2.99e-01	100.0%	57.9%
3305901	611.9.1.0 ↗	alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain	0.53	37.0	3.59e-01	72.1%	83.7%
3295653	4268.2.1.0 ↗	alpha duplicates or obligate multimers › EspA/CesA-like › EspA chaperone CesA › EspA chaperone CesA	0.52	39.0	4.00e-01	78.7%	91.7%
3601986	5050.1.1.4 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nucleoside_tran	0.52	44.0	4.00e-01	99.2%	67.9%
5063386	1075.5.1.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter	0.52	46.0	3.97e-01	99.2%	88.0%
3450792	632.1.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain	0.52	39.0	3.95e-01	79.5%	84.8%
3568326	193.1.1.41 ↗	alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › WHIM1	0.52	38.0	3.28e-01	80.3%	47.7%
3725297	3755.4.1.45 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PF30922	0.52	47.0	4.38e-01	100.0%	82.7%
3864123	633.21.1.10 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL	0.52	37.0	3.69e-01	100.0%	70.8%
4392854	4271.1.1.0 ↗	alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like	0.51	35.0	2.81e-01	71.3%	89.8%
3894479	5057.1.1.13 ↗	alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Strabismus	0.50	44.0	4.26e-01	100.0%	88.1%

D2 high residues 201-380

PDB

Domain cluster: rep: hypothetical_protein_TW95_gp1591__YP_009120560__Pandoravirus_inopinatum__1605721__D181-198_210-259_277-315_339-420

D3 high residues 392-504

PDB

Domain cluster: rep: hypothetical_protein_psal_cds_820__YP_008437927__Pandoravirus_salinus__1349410__D388-490

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2radA03	1.20.1440.30	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain	0.58	42.0	4.09e-01	76.1%	74.0%
4gzcA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.58	43.0	4.11e-01	78.8%	87.9%
1gcvB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.57	40.0	3.82e-01	72.6%	75.7%
6nmgA01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.56	43.0	2.96e-01	82.3%	43.0%
3onkA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.55	42.0	3.99e-01	82.3%	87.6%
2jqqA00	1.20.58.1240	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.54	45.0	4.07e-01	90.3%	98.1%
4xaxB02	1.20.58.1290	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain	0.54	39.0	4.11e-01	91.2%	85.9%
1f5mA00	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.53	37.0	3.28e-01	73.5%	93.8%
6tkyA03	1.20.58.740	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C	0.51	40.0	3.91e-01	83.2%	91.8%
3juiA00	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.51	40.0	3.54e-01	85.8%	79.3%
5zjgA02	1.10.246.130	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain	0.51	30.0	3.03e-01	91.2%	58.0%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3690288	109.4.1.2628 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ, Importin_rep_4, Importin_rep_5, Importin_rep_6, TOR1L1_N, TPR_IMB1, TPR_IPO5	0.60	45.0	2.60e-01	77.9%	11.9%
3322282	109.4.1.21 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ENTH	0.57	44.0	3.80e-01	82.3%	69.7%
3305568	109.4.1.21 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ENTH	0.56	42.0	3.81e-01	79.6%	73.8%
3487853	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	41.0	3.42e-01	76.1%	51.5%
3731836	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.56	39.0	3.19e-01	71.7%	58.1%
3606213	109.4.1.21 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ENTH	0.55	43.0	3.93e-01	85.0%	80.6%
3441148	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	43.0	3.43e-01	87.6%	96.8%
3584767	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.54	41.0	3.26e-01	79.6%	63.4%
3201336	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.54	40.0	3.11e-01	77.0%	58.8%
4562658	2002.1.1.205 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,CofH_C	0.54	47.0	3.29e-01	99.1%	79.7%
3701141	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	38.0	3.16e-01	82.3%	81.4%