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hypothetical_protein_pmac_cds_360

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_360__YP_009481044__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481044 ↗
Protein ID:
hypothetical_protein_pmac_cds_360
Kingdom:
euk

Quality

59.4 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (31 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-94
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.87 67.0 6.03e-01 82.0% 75.6%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 60.0 5.71e-01 82.0% 74.6%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.78 61.0 5.56e-01 83.6% 68.8%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.78 57.0 4.84e-01 77.0% 53.7%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.76 54.0 4.68e-01 73.8% 51.6%
3ljcA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 54.0 4.35e-01 80.3% 42.1%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.72 55.0 4.25e-01 82.0% 67.9%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 52.0 4.92e-01 80.3% 69.3%
4dyqA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 54.0 4.56e-01 88.5% 67.0%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.61 45.0 3.74e-01 78.7% 60.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3439829 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 64.0 5.54e-01 77.0% 52.2%
3924438 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 57.0 5.99e-01 73.8% 76.4%
3457731 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.83 61.0 5.50e-01 77.0% 58.7%
3403835 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 61.0 5.37e-01 78.7% 57.6%
3916304 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 60.0 5.23e-01 78.7% 54.4%
3819371 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 54.0 5.72e-01 73.8% 78.2%
3786936 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 58.0 5.24e-01 77.0% 58.7%
3319774 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 56.0 5.22e-01 75.4% 89.3%
3204329 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 56.0 4.62e-01 75.4% 44.8%
3441758 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.78 69.0 4.20e-01 100.0% 58.3%
3347793 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 59.0 5.55e-01 82.0% 93.3%
3184851 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 55.0 4.97e-01 77.0% 57.6%
4012180 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 55.0 4.19e-01 77.0% 35.0%
3810013 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 58.0 5.72e-01 80.3% 92.2%
3650217 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 60.0 5.58e-01 83.6% 90.5%
3678716 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.75 54.0 5.15e-01 75.4% 65.7%
3725732 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 54.0 4.93e-01 77.0% 63.7%
None — 0.74 66.0 4.27e-01 100.0% 75.4%
None — 0.74 66.0 3.82e-01 100.0% 41.1%
3632792 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.73 52.0 5.66e-01 75.4% 94.0%
3464778 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 55.0 4.97e-01 83.6% 64.7%
3424909 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.71 64.0 3.76e-01 100.0% 54.0%
3422989 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.69 63.0 3.69e-01 100.0% 55.3%
3934680 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.69 46.0 4.95e-01 75.4% 84.0%
3443498 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.66 52.0 4.69e-01 86.9% 64.7%
4983207 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.62 45.0 3.24e-01 77.0% 77.1%
D2 high residues 98-184
PDB
D3 high residues 198-312
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_357__YP_008437077__Pandoravirus_salinus__1349410__D224-353
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6hpvA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 44.0 4.99e-01 92.2% 96.4%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.62 44.0 4.98e-01 83.5% 95.5%
1jkgB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 50.0 4.30e-01 92.2% 82.8%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 48.0 4.62e-01 90.4% 91.6%
1q40D00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 48.0 4.21e-01 93.0% 92.6%
3nv0B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 4.49e-01 92.2% 89.7%
3cnxA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 4.41e-01 90.4% 92.8%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 4.73e-01 90.4% 94.6%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 4.41e-01 91.3% 95.3%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 4.46e-01 91.3% 95.9%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 4.45e-01 92.2% 96.1%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 3.96e-01 92.2% 87.6%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 4.38e-01 92.2% 90.8%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 4.37e-01 90.4% 93.7%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.53 45.0 4.22e-01 92.2% 91.7%
2b5lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 3.18e-01 93.9% 36.9%
2rgqB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 45.0 4.30e-01 93.0% 92.5%
3hi7B02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 4.07e-01 91.3% 76.6%
3f7sA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 4.11e-01 91.3% 91.5%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 3.02e-01 93.9% 29.7%
1oygA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 3.00e-01 93.9% 31.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3925915 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.67 31.0 4.51e-01 79.1% 100.0%
3330850 243.3.1.12 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.63 48.0 5.12e-01 94.8% 93.0%
3468401 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 43.0 4.78e-01 90.4% 93.3%
3212332 243.1.1.85 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 0.61 52.0 4.98e-01 92.2% 93.1%
3953532 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.59 45.0 4.00e-01 79.1% 86.9%
4948943 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 39.0 4.66e-01 90.4% 100.0%
4588568 331.3.1.45 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF28462 0.58 42.0 3.41e-01 73.9% 61.4%
3830041 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.56 48.0 4.65e-01 93.0% 88.5%
3784766 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 3.34e-01 93.9% 38.2%
2374 5087.3.1.1 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.54 28.0 3.54e-01 99.1% 85.3%
1562283 243.1.1.11 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LEH 0.54 45.0 4.37e-01 91.3% 86.8%
3253253 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.54 44.0 4.24e-01 90.4% 87.4%
3278526 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 46.0 4.40e-01 93.9% 94.1%
4987033 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.53 38.0 4.00e-01 92.2% 81.0%
3948878 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 45.0 4.45e-01 92.2% 98.4%
3685395 243.1.1.10 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.53 45.0 4.35e-01 92.2% 90.8%
5051192 243.3.1.52 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 0.53 42.0 2.79e-01 86.1% 77.4%
3184407 3880.1.1.2 ↗ beta barrels › Glycoside hydrolase family 127 C-terminal domain › Glycoside hydrolase family 127 C-terminal domain › Glycoside hydrolase family 127 C-terminal domain › Glyco_hydro127C 0.53 43.0 4.06e-01 87.8% 92.1%
3628522 5.1.4.489 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Prenyltrans 0.52 46.0 2.82e-01 100.0% 39.4%
3995515 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 47.0 3.42e-01 97.4% 72.7%
3574500 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 46.0 3.10e-01 100.0% 66.9%
3957483 243.1.1.77 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.52 43.0 4.06e-01 87.8% 86.7%
4019479 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.52 40.0 2.92e-01 81.7% 46.6%
4460572 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 43.0 4.13e-01 91.3% 93.1%
3277627 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 43.0 4.39e-01 92.2% 92.2%
3734097 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 45.0 3.06e-01 94.8% 51.4%