←Back to structures
hypothetical_protein_pmac_cds_365
Euk-VirPandoravirus_macleodensis
hypothetical_protein_pmac_cds_365__YP_009481049__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009481049 ↗
- Protein ID:
- hypothetical_protein_pmac_cds_365
- Kingdom:
- euk
Quality
71.0
mean pLDDT
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-174
Domain cluster:
rep: hypothetical_protein_pneo_cds_567__YP_009482177__Pandoravirus_neocaledonia__2107708__D32-157
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19166.7 best | DUF5848 | 73.2 | 2.10e-20 | 45.1% | 98.4% |
D2
high
residues 185-292
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6julA02 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.68 | 38.0 | 4.04e-01 | 99.1% | 62.5% |
| 2o5nA02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.67 | 49.0 | 4.31e-01 | 97.2% | 52.9% |
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.60 | 28.0 | 3.41e-01 | 96.3% | 67.2% |
| 7ob9B01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.59 | 41.0 | 3.46e-01 | 72.2% | 98.4% |
| 3fqmA01 | 2.20.25.210 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B | 0.59 | 29.0 | 3.73e-01 | 94.4% | 82.0% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 26.0 | 3.23e-01 | 97.2% | 65.6% |
| 2qq6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 39.0 | 3.91e-01 | 75.0% | 92.2% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.55 | 43.0 | 3.65e-01 | 85.2% | 92.0% |
| 2ia1A01 | 3.30.500.20 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains | 0.54 | 39.0 | 3.86e-01 | 99.1% | 68.9% |
| 4ffeX00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.53 | 49.0 | 4.35e-01 | 100.0% | 92.7% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.53 | 48.0 | 4.23e-01 | 100.0% | 93.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4989110 | 884.1.1.1 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C | 0.69 | 29.0 | 3.36e-01 | 99.1% | 52.5% |
| 5014879 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.67 | 32.0 | 3.17e-01 | 98.1% | 43.5% |
| 3964304 | 884.1.1.1 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C | 0.66 | 29.0 | 3.25e-01 | 99.1% | 48.9% |
| 4031110 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 36.0 | 3.44e-01 | 99.1% | 48.8% |
| 327605 | 233.1.1.8 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › M157_N_1 | 0.62 | 47.0 | 4.01e-01 | 100.0% | 49.1% |
| 3081033 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.62 | 38.0 | 3.59e-01 | 99.1% | 52.0% |
| 3189294 | 884.1.1.0 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain | 0.61 | 33.0 | 3.16e-01 | 99.1% | 45.6% |
| 3541953 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.60 | 39.0 | 3.24e-01 | 100.0% | 38.9% |
| 3818615 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.54 | 49.0 | 3.48e-01 | 99.1% | 99.1% |
| 3630103 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 43.0 | 4.06e-01 | 88.9% | 87.7% |
| 4115981 | 10.32.1.14 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_11 | 0.53 | 37.0 | 3.13e-01 | 100.0% | 45.3% |
| 3415990 | 271.1.1.5 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › G2F | 0.52 | 41.0 | 3.32e-01 | 88.0% | 52.4% |
| 3709083 | 206.1.3.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF7920 | 0.52 | 46.0 | 3.26e-01 | 100.0% | 34.2% |
| None | — | 0.52 | 46.0 | 3.28e-01 | 99.1% | 98.8% | |
| 3599659 | 206.1.3.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF7920 | 0.51 | 46.0 | 3.10e-01 | 100.0% | 32.2% |
| 3322492 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.50 | 44.0 | 3.22e-01 | 97.2% | 95.7% |
D3
high
residues 307-402
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1miwA03 | 1.20.58.560 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 46.0 | 4.60e-01 | 77.1% | 91.0% |
| 4c9bB00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 49.0 | 3.55e-01 | 87.5% | 66.8% |
| 7smgD00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.58 | 41.0 | 3.67e-01 | 75.0% | 77.5% |
| 3ajcA01 | 1.10.220.30 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain | 0.57 | 41.0 | 4.05e-01 | 86.5% | 69.2% |
| 3mvpA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 41.0 | 3.57e-01 | 77.1% | 83.2% |
| 3zh9B03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.55 | 39.0 | 3.64e-01 | 75.0% | 100.0% |
| 1kt1A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 40.0 | 3.42e-01 | 81.2% | 70.9% |
| 4iluA02 | 1.20.58.1290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain | 0.52 | 42.0 | 4.07e-01 | 99.0% | 77.5% |
| 4evfA03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.52 | 39.0 | 4.28e-01 | 86.5% | 95.0% |
| 3n2oA03 | 1.20.58.930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 37.0 | 3.76e-01 | 75.0% | 84.4% |
| 2xzeB00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.52 | 42.0 | 3.78e-01 | 89.6% | 63.8% |
| 8gpvA01 | 1.25.60.10 | Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like | 0.51 | 39.0 | 3.62e-01 | 83.3% | 69.0% |
| 4txiA03 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.51 | 35.0 | 3.51e-01 | 84.4% | 67.0% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.51 | 32.0 | 3.38e-01 | 79.2% | 69.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3338899 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.64 | 39.0 | 3.32e-01 | 89.6% | 38.1% |
| 3610156 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 42.0 | 3.82e-01 | 82.3% | 86.7% |
| 391180 | 191.1.1.51 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tet_C_40 | 0.55 | 40.0 | 3.66e-01 | 77.1% | 91.7% |
| 3918763 | 101.1.1.117 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CHDCT2 | 0.55 | 42.0 | 4.19e-01 | 97.9% | 79.0% |
| None | — | 0.55 | 45.0 | 3.38e-01 | 90.6% | 36.7% | |
| 3258175 | 109.4.1.1790 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30359 | 0.53 | 43.0 | 3.23e-01 | 90.6% | 63.5% |
| 3191206 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.52 | 45.0 | 2.94e-01 | 99.0% | 35.6% |
| 1546115 | 109.4.1.280 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PSD13_N | 0.52 | 40.0 | 3.43e-01 | 84.4% | 61.9% |