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hypothetical_protein_pmac_cds_436
Euk-VirPandoravirus_macleodensis
hypothetical_protein_pmac_cds_436__YP_009481120__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009481120 ↗
- Protein ID:
- hypothetical_protein_pmac_cds_436
- Kingdom:
- euk
Quality
69.6
mean pLDDT
Cluster
View cluster (44 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 42-174
Domain cluster:
rep: hypothetical_protein_pmac_cds_359__YP_009481043__Pandoravirus_macleodensis__2107707__D58-179
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3988302 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.55 | 38.0 | 3.48e-01 | 79.7% | 52.8% |
| 4941976 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.54 | 41.0 | 4.39e-01 | 93.2% | 97.3% |
| 3839809 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.52 | 30.0 | 3.12e-01 | 76.7% | 60.0% |
| 3696933 | 3621.1.1.0 ↗ | alpha arrays › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain | 0.52 | 42.0 | 4.19e-01 | 88.7% | 90.0% |
D2
high
residues 197-358
D3
high
residues 381-475
Domain cluster:
rep: hypothetical_protein_psal_cds_820__YP_008437927__Pandoravirus_salinus__1349410__D388-490
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ks9A01 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.64 | 47.0 | 4.29e-01 | 77.9% | 97.6% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.60 | 43.0 | 3.94e-01 | 73.7% | 96.8% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.60 | 42.0 | 3.88e-01 | 73.7% | 75.0% |
| 2x0cA01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.59 | 46.0 | 3.79e-01 | 84.2% | 92.1% |
| 3nowA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.59 | 45.0 | 3.12e-01 | 84.2% | 32.1% |
| 4fcaA03 | 1.10.390.30 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Peptidase M60, enhancin-like domain 3 | 0.57 | 41.0 | 3.52e-01 | 75.8% | 90.6% |
| 2cqnA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.55 | 31.0 | 3.33e-01 | 74.7% | 64.9% |
| 4huqS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.54 | 40.0 | 3.46e-01 | 81.1% | 69.5% |
| 1vt0M05 | 6.10.280.90 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 31.0 | 3.43e-01 | 75.8% | 71.6% |
| 6xpdA01 | 1.20.1510.10 | Mainly Alpha › Up-down Bundle › Alpha-lytic protease prodomain-like › Cation efflux protein transmembrane domain | 0.53 | 41.0 | 3.30e-01 | 84.2% | 80.7% |
| 7qefA01 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.53 | 45.0 | 3.16e-01 | 100.0% | 84.3% |
| 1vi0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 36.0 | 3.23e-01 | 73.7% | 89.0% |
| 2n1rA00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.51 | 39.0 | 3.53e-01 | 85.3% | 58.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3181695 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.59 | 45.0 | 3.30e-01 | 82.1% | 82.2% |
| 3936543 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 49.0 | 3.71e-01 | 92.6% | 57.0% |
| 3726625 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.58 | 46.0 | 3.14e-01 | 84.2% | 25.8% |
| 3715472 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.57 | 43.0 | 2.61e-01 | 80.0% | 33.3% |
| 3717626 | 109.4.1.429 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HDS | 0.57 | 45.0 | 2.76e-01 | 85.3% | 17.7% |
| 3765647 | 109.3.1.162 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 | 0.57 | 46.0 | 3.16e-01 | 88.4% | 30.7% |
| 3701884 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 48.0 | 4.17e-01 | 96.8% | 85.3% |
| 3274219 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 42.0 | 3.85e-01 | 81.1% | 86.4% |
| 3849249 | 109.25.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A | 0.53 | 43.0 | 3.53e-01 | 89.5% | 87.2% |
| 4180416 | 193.1.1.1 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH | 0.53 | 36.0 | 3.21e-01 | 95.8% | 46.9% |
| 3624439 | 611.4.1.0 ↗ | alpha bundles › N-cbl like › PG0775 C-terminal domain-like › PG0775 C-terminal domain-like | 0.53 | 39.0 | 3.28e-01 | 78.9% | 70.2% |
| 3709117 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 41.0 | 3.34e-01 | 88.4% | 56.8% |
| 3512636 | 3930.1.1.6 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › Dicer_PBD | 0.51 | 36.0 | 3.45e-01 | 85.3% | 62.6% |
| 3695603 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 43.0 | 3.26e-01 | 98.9% | 66.0% |
D4
high
residues 494-546
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xjxA04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 60.0 | 3.78e-01 | 100.0% | 32.6% |
| 2e9xD01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 47.0 | 3.53e-01 | 77.4% | 48.2% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.65 | 47.0 | 3.91e-01 | 100.0% | 41.6% |
| 1qd1B02 | 3.30.70.670 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain | 0.61 | 44.0 | 3.25e-01 | 79.2% | 47.6% |
| 2dk8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 45.0 | 4.23e-01 | 81.1% | 95.4% |
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.60 | 50.0 | 4.27e-01 | 100.0% | 81.7% |
| 7jgsG02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 50.0 | 4.21e-01 | 100.0% | 83.7% |
| 3nhiA02 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.59 | 52.0 | 3.82e-01 | 100.0% | 69.2% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 49.0 | 4.08e-01 | 100.0% | 76.7% |
| 2cz2A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 46.0 | 3.52e-01 | 100.0% | 37.3% |
| 3nhiA01 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.57 | 49.0 | 3.64e-01 | 100.0% | 77.2% |
| 5jj6B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 45.0 | 3.75e-01 | 88.7% | 80.2% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.56 | 40.0 | 3.24e-01 | 81.1% | 61.5% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 4.03e-01 | 88.7% | 72.4% |
| 5hvqC01 | 3.90.1150.220 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.55 | 41.0 | 3.73e-01 | 88.7% | 93.8% |
| 1jr8A00 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.54 | 42.0 | 3.61e-01 | 100.0% | 80.0% |
| 3kzxA02 | 1.10.150.730 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.53 | 40.0 | 3.85e-01 | 83.0% | 71.0% |
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.51 | 36.0 | 3.46e-01 | 94.3% | 63.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3452003 | 109.4.1.1273 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 | 0.72 | 50.0 | 3.39e-01 | 75.5% | 22.4% |
| 5058284 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.64 | 46.0 | 3.01e-01 | 81.1% | 19.0% |
| 4030843 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.63 | 44.0 | 3.44e-01 | 73.6% | 100.0% |
| 3816142 | 161.1.1.12 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › zf-RVT | 0.62 | 52.0 | 3.86e-01 | 98.1% | 62.7% |
| 4633544 | 3500.1.1.2 ↗ | alpha bundles › ENOD40 peptide-binding domain in sucrose synthase-1 › ENOD40 peptide-binding domain in sucrose synthase-1 › ENOD40 peptide-binding domain in sucrose synthase-1 › SUS_EPBD | 0.62 | 52.0 | 4.08e-01 | 100.0% | 44.2% |
| 4279089 | 7094.1.1.3 ↗ | alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › OPA1_C | 0.59 | 45.0 | 3.45e-01 | 81.1% | 40.0% |
| 3385513 | 148.1.3.238 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF815 | 0.57 | 41.0 | 4.20e-01 | 86.8% | 78.0% |
| 3993627 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 42.0 | 3.94e-01 | 100.0% | 65.7% |
| 5026620 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.56 | 46.0 | 3.63e-01 | 100.0% | 57.7% |
| 3717244 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 45.0 | 4.12e-01 | 100.0% | 67.1% |
| 4146380 | 4133.1.1.2 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 | 0.55 | 42.0 | 3.23e-01 | 92.5% | 34.6% |
| 3589827 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.55 | 43.0 | 2.87e-01 | 86.8% | 21.4% |
| 3439758 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.55 | 38.0 | 3.23e-01 | 75.5% | 42.0% |
| 4370096 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.55 | 41.0 | 2.77e-01 | 83.0% | 22.0% |
| 3206236 | 101.1.2.520 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7779 | 0.55 | 45.0 | 3.87e-01 | 100.0% | 81.1% |
| 1720178 | 1026.1.1.1 ↗ | alpha bundles › Rev protein › Rev protein › Rev protein › Borrelia_REV | 0.54 | 41.0 | 3.28e-01 | 96.2% | 40.6% |
| 3731112 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.53 | 41.0 | 3.99e-01 | 84.9% | 78.3% |
| 1712010 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 40.0 | 4.06e-01 | 88.7% | 94.3% |
| 3952621 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.51 | 40.0 | 3.73e-01 | 88.7% | 85.5% |