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hypothetical_protein_pmac_cds_466

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_466__YP_009481150__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481150 ↗
Protein ID:
hypothetical_protein_pmac_cds_466
Kingdom:
euk

Quality

70.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (24 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-51
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009481215__Pandoravirus_macleodensis__2107707__D13-58
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ibkB00 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.86 64.0 6.41e-01 80.4% 80.4%
2p1oB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.85 60.0 6.41e-01 73.9% 92.1%
1oyzA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.80 71.0 4.33e-01 100.0% 21.2%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.78 64.0 5.24e-01 93.5% 60.9%
1fs2A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.76 64.0 3.96e-01 95.7% 23.9%
6m90A01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.75 61.0 4.81e-01 93.5% 74.7%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 53.0 4.84e-01 84.8% 100.0%
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.67 51.0 4.48e-01 82.6% 78.6%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 48.0 3.71e-01 78.3% 48.0%
3bh1A02 1.20.1570.10 Mainly Alpha › Up-down Bundle › dip2346 fold › dip2346 domain like 0.63 43.0 3.32e-01 71.7% 66.3%
4muoA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.62 48.0 4.14e-01 84.8% 69.4%
2yx8A00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.61 46.0 3.78e-01 80.4% 72.8%
1vb5A01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.60 42.0 3.47e-01 76.1% 55.3%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.59 46.0 4.13e-01 89.1% 82.9%
1n81A00 1.10.3030.10 Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 0.59 41.0 2.87e-01 80.4% 36.6%
3kjxD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 46.0 4.28e-01 91.3% 68.9%
3bemB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.57 47.0 3.07e-01 91.3% 71.8%
4ga4A01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.57 44.0 3.99e-01 87.0% 83.6%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.57 44.0 4.09e-01 82.6% 100.0%
1vquA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.55 43.0 3.94e-01 93.5% 82.1%
2y2wC02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 44.0 2.68e-01 100.0% 45.5%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 35.0 2.97e-01 93.5% 36.0%
1fadA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.51 34.0 2.87e-01 73.9% 89.5%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3820691 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.91 64.0 6.78e-01 73.9% 85.0%
3341479 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.91 70.0 6.01e-01 82.6% 54.3%
3461050 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.89 67.0 6.52e-01 80.4% 76.0%
3795292 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.89 65.0 6.86e-01 80.4% 90.0%
1807269 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.88 66.0 6.52e-01 80.4% 77.1%
3939710 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.87 68.0 6.04e-01 84.8% 60.0%
3173927 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.87 64.0 6.55e-01 80.4% 82.2%
3189379 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.86 71.0 6.24e-01 89.1% 67.7%
3529395 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.86 65.0 5.81e-01 82.6% 58.5%
4011424 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.85 73.0 5.76e-01 93.5% 90.0%
3221696 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.85 71.0 4.06e-01 91.3% 15.7%
3635440 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 65.0 6.35e-01 84.8% 78.0%
3731257 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.84 59.0 6.22e-01 76.1% 87.5%
3793366 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.83 57.0 6.03e-01 73.9% 85.0%
3459106 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 57.0 5.80e-01 80.4% 75.6%
3688419 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.82 58.0 6.10e-01 78.3% 87.5%
3217628 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.82 58.0 6.08e-01 76.1% 87.5%
3206932 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.82 63.0 3.71e-01 84.8% 10.8%
3621592 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 62.0 6.09e-01 87.0% 78.0%
3672250 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.81 68.0 4.46e-01 93.5% 34.7%
3425357 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.81 69.0 5.70e-01 93.5% 88.5%
3215069 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.81 60.0 6.13e-01 93.5% 82.2%
3439461 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.81 69.0 6.07e-01 93.5% 89.2%
3751898 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.81 72.0 6.22e-01 100.0% 94.3%
3501462 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.80 59.0 6.19e-01 93.5% 92.5%
3821430 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 67.0 5.55e-01 93.5% 78.8%
3531870 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.80 57.0 5.63e-01 80.4% 72.0%
None — 0.80 71.0 3.95e-01 100.0% 95.1%
3442643 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.80 72.0 3.95e-01 100.0% 94.2%
3691218 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 59.0 5.61e-01 82.6% 72.7%
3276040 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 65.0 5.69e-01 93.5% 75.7%
3300009 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 65.0 5.43e-01 93.5% 81.2%
3358453 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 66.0 5.70e-01 93.5% 84.3%
3339367 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 60.0 5.97e-01 84.8% 79.6%
3547224 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 60.0 4.91e-01 84.8% 71.8%
3646855 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.78 58.0 5.88e-01 82.6% 86.7%
3211847 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.78 58.0 5.93e-01 84.8% 86.7%
3466008 207.1.1.96 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1 0.77 59.0 3.40e-01 87.0% 9.2%
3726245 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 59.0 5.78e-01 84.8% 80.0%
3671627 70.3.1.1 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.77 65.0 4.09e-01 95.7% 25.1%
3225722 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.77 63.0 4.72e-01 93.5% 89.6%
3422328 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.77 63.0 5.18e-01 93.5% 85.9%
3762363 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.76 63.0 3.51e-01 93.5% 11.4%
3339620 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 57.0 5.76e-01 80.4% 86.7%
3685535 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 63.0 5.25e-01 93.5% 87.5%
None — 0.76 70.0 3.89e-01 100.0% 87.9%
3443639 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 57.0 5.66e-01 84.8% 80.0%
3652521 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 62.0 5.37e-01 93.5% 90.4%
3652288 145.1.1.50 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › Kelch_1 0.76 66.0 3.95e-01 100.0% 42.2%
3653326 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.76 58.0 5.87e-01 84.8% 86.7%
3724474 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.76 61.0 3.46e-01 91.3% 10.8%
3320386 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.76 62.0 5.01e-01 93.5% 73.3%
4019682 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 62.0 4.91e-01 93.5% 80.0%
3363836 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.75 61.0 5.07e-01 93.5% 84.7%
3243910 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 52.0 5.09e-01 73.9% 68.0%
3344543 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.75 61.0 5.03e-01 93.5% 83.5%
3639601 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.74 58.0 3.26e-01 89.1% 13.0%
3631167 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 60.0 4.98e-01 93.5% 83.5%
3194725 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.74 59.0 4.95e-01 93.5% 82.4%
3644704 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 59.0 4.91e-01 93.5% 84.7%
3301911 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.73 59.0 4.90e-01 93.5% 81.2%
3595717 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.73 59.0 5.35e-01 93.5% 90.8%
3237331 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.73 53.0 5.21e-01 80.4% 76.0%
3693589 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.73 55.0 5.56e-01 84.8% 88.9%
3740971 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 58.0 4.84e-01 93.5% 78.8%
3833527 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.72 57.0 5.38e-01 93.5% 83.3%
3223932 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.72 50.0 5.27e-01 80.4% 87.5%
3638344 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.72 61.0 5.19e-01 100.0% 86.3%
3272640 207.1.1.79 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box 0.72 59.0 3.65e-01 95.7% 20.4%
3208423 109.3.1.168 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_5 0.71 58.0 3.33e-01 100.0% 9.0%
4012559 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.71 58.0 4.86e-01 95.7% 75.3%
3507975 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.71 58.0 3.54e-01 95.7% 23.5%
3616135 145.1.1.32 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box_4 0.70 56.0 5.13e-01 95.7% 93.8%
3230101 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.70 57.0 3.96e-01 100.0% 26.5%
3816173 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.69 55.0 3.20e-01 93.5% 16.9%
3244934 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.68 55.0 3.38e-01 97.8% 31.9%
3233582 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.68 56.0 3.45e-01 100.0% 31.1%
3257315 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 54.0 4.74e-01 91.3% 87.1%
3669897 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.67 51.0 3.02e-01 89.1% 16.8%
3218165 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.67 52.0 5.48e-01 84.8% 97.5%
3187719 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.67 56.0 4.86e-01 100.0% 86.7%
None — 0.66 51.0 3.01e-01 91.3% 14.1%
3345966 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.66 50.0 4.33e-01 84.8% 69.3%
3833602 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.65 53.0 3.16e-01 95.7% 15.1%
3229045 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.65 54.0 4.41e-01 100.0% 68.4%
3203146 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.65 52.0 4.01e-01 93.5% 85.2%
D2 medium residues 95-211
PDB
D3 medium residues 276-352
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_552__YP_008437467__Pandoravirus_salinus__1349410__D281-356