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hypothetical_protein_pmac_cds_542

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_542__YP_009481226__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481226 ↗
Protein ID:
hypothetical_protein_pmac_cds_542
Kingdom:
euk

Quality

72.7 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (47 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-96
PDB
D2 medium residues 130-151_181-240
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wh4A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.66 41.0 3.99e-01 95.1% 55.3%
4leuA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 59.0 4.55e-01 100.0% 48.4%
4rlyA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.64 58.0 3.91e-01 100.0% 39.3%
7xceA01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.64 58.0 4.13e-01 100.0% 52.5%
4hbdA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.64 57.0 4.06e-01 100.0% 55.1%
1vdyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 56.0 4.72e-01 100.0% 85.0%
2ajaA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.63 56.0 3.72e-01 100.0% 26.5%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.63 43.0 4.04e-01 72.0% 86.0%
3gxhA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 46.0 3.83e-01 96.3% 68.6%
1x5bA01 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 47.0 4.06e-01 100.0% 89.6%
3lxuX06 1.25.40.710 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 45.0 3.35e-01 100.0% 52.5%
2mpcA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 43.0 4.24e-01 87.8% 87.8%
2fbqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 40.0 3.06e-01 84.1% 75.6%
4gbmA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 43.0 3.04e-01 98.8% 54.1%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4349221 109.3.1.166 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.68 58.0 4.26e-01 100.0% 34.7%
3383002 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.68 62.0 4.62e-01 100.0% 44.0%
3288019 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.68 61.0 3.80e-01 100.0% 23.9%
4325700 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.67 61.0 4.84e-01 100.0% 74.4%
3195802 109.3.1.186 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_5 0.65 60.0 4.15e-01 100.0% 45.0%
3663560 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.65 56.0 4.36e-01 100.0% 48.4%
3665948 109.4.1.1273 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3 0.64 57.0 4.71e-01 100.0% 73.1%
3328100 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.60 52.0 3.44e-01 100.0% 24.3%
3439589 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.58 52.0 4.23e-01 100.0% 56.1%
3678516 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.58 48.0 4.20e-01 100.0% 60.0%
3600289 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 53.0 3.60e-01 100.0% 33.3%
5051406 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.57 39.0 3.00e-01 70.7% 63.8%
3673426 109.4.1.1279 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long, TPR_24 0.56 50.0 3.07e-01 100.0% 17.3%
3368836 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.55 49.0 4.12e-01 100.0% 61.4%
3645626 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.55 47.0 3.80e-01 100.0% 47.4%
3385274 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.55 48.0 3.54e-01 100.0% 35.7%
3832763 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.55 45.0 3.83e-01 100.0% 53.1%
3670218 109.4.1.1292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3 0.54 44.0 3.95e-01 93.9% 68.0%
3666211 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.54 47.0 4.02e-01 100.0% 61.4%
3353090 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.54 47.0 3.85e-01 100.0% 58.7%
3384024 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.54 47.0 4.56e-01 100.0% 87.4%
3671661 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.53 46.0 4.48e-01 100.0% 86.3%
3650187 109.4.1.1279 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long, TPR_24 0.53 45.0 2.99e-01 100.0% 21.2%
3337139 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.53 46.0 3.78e-01 100.0% 51.9%
3343785 109.4.1.1280 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long 0.53 46.0 3.72e-01 100.0% 48.8%
3683390 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.53 45.0 3.95e-01 100.0% 77.8%
3824817 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.53 46.0 4.35e-01 100.0% 83.0%
3821289 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.53 45.0 3.59e-01 100.0% 56.2%
3437190 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.52 46.0 3.77e-01 100.0% 53.3%
3384026 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.52 44.0 3.62e-01 100.0% 49.4%
3464656 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.52 46.0 3.79e-01 100.0% 55.3%
3608448 109.4.1.921 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IF140-IFT172 0.52 46.0 4.32e-01 100.0% 94.0%
3301232 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.51 45.0 3.89e-01 100.0% 62.3%
3817460 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.51 43.0 3.63e-01 100.0% 56.1%
3299036 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.51 43.0 4.09e-01 100.0% 82.0%
4027843 109.46.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) 0.51 45.0 3.92e-01 100.0% 65.6%
4437117 314.1.1.9 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.50 43.0 2.88e-01 96.3% 65.6%
D3 medium residues 241-296
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3i71B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.53e-01 78.6% 75.9%
1aa7A02 1.10.10.180 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Influenza matrix protein M1, N-terminal subdomain 2 0.58 41.0 3.78e-01 94.6% 55.1%
1y8qD02 1.10.10.520 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 0.53 42.0 3.06e-01 96.4% 90.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4888417 109.3.1.173 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, TRP_2, Ank_2, Ank_3 0.69 55.0 4.02e-01 100.0% 31.8%
3881339 3998.1.1.1 ↗ alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 0.61 36.0 3.36e-01 82.1% 45.7%
3577735 3998.1.1.1 ↗ alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 0.61 36.0 3.19e-01 82.1% 40.0%
3481568 3998.1.1.1 ↗ alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 0.60 36.0 3.34e-01 82.1% 45.7%
3501214 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.60 39.0 3.09e-01 100.0% 29.6%
5029760 7516.1.1.2 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.55 46.0 2.96e-01 100.0% 37.7%
4029619 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 30.0 2.48e-01 71.4% 30.0%
3828382 4177.1.1.11 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF632 0.53 36.0 2.30e-01 73.2% 99.4%
3734511 109.4.1.414 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS19_N 0.52 42.0 2.82e-01 92.9% 37.5%
3314237 3455.1.1.13 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › PF27039 0.51 40.0 3.62e-01 87.5% 63.7%
D4 medium residues 297-380
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4n5qA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.82 65.0 4.48e-01 82.1% 34.1%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.76 59.0 5.57e-01 82.1% 85.0%
2f37A00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.75 69.0 4.83e-01 100.0% 44.9%
3ljnA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.73 65.0 4.38e-01 96.4% 57.9%
5z2mB00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.72 56.0 4.68e-01 82.1% 52.6%
4zhbA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.71 54.0 5.01e-01 82.1% 64.4%
7kb2B01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.68 53.0 4.13e-01 82.1% 39.5%
6ghmC01 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.68 61.0 5.21e-01 98.8% 62.7%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.67 57.0 5.40e-01 94.0% 79.2%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.67 45.0 4.22e-01 70.2% 81.1%
2qw6D00 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.67 47.0 4.71e-01 82.1% 70.9%
2zgdA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.66 56.0 5.31e-01 92.9% 78.4%
3lvyE01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.65 47.0 3.74e-01 75.0% 57.0%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.64 54.0 4.83e-01 94.0% 70.2%
3wirA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.64 56.0 3.67e-01 100.0% 47.4%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.62 48.0 4.58e-01 83.3% 79.8%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.61 49.0 5.05e-01 98.8% 96.2%
7qihA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.60 49.0 4.66e-01 100.0% 75.2%
3bqoA00 1.25.40.210 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain 0.59 49.0 3.81e-01 95.2% 51.0%
4d7rA01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.58 43.0 4.43e-01 82.1% 89.0%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 47.0 4.63e-01 97.6% 83.3%
3ij6A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 50.0 3.46e-01 100.0% 29.4%
2lvfA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.57 45.0 4.11e-01 85.7% 93.9%
1h6gA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 40.0 3.54e-01 73.8% 75.0%
4y6cA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 50.0 3.76e-01 100.0% 53.3%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 39.0 3.69e-01 71.4% 86.3%
1iqpA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.56 42.0 4.06e-01 79.8% 76.6%
2kckA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 48.0 4.41e-01 100.0% 74.1%
1eqzF00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.55 36.0 3.29e-01 98.8% 52.3%
4epzA00 1.25.40.810 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ 0.54 46.0 3.90e-01 98.8% 66.2%
4ga0A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 46.0 3.90e-01 100.0% 64.3%
1n1cA01 1.20.120.1820 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 35.0 3.20e-01 76.2% 50.4%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.51 35.0 3.84e-01 71.4% 94.0%
3hd5B01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 34.0 2.87e-01 73.8% 36.2%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4975607 109.4.1.124 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_alkylation 0.79 62.0 4.03e-01 83.3% 34.8%
3324833 109.4.1.1295 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 0.77 71.0 4.82e-01 100.0% 30.9%
3295726 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.76 55.0 3.94e-01 82.1% 28.6%
3594037 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.74 58.0 4.44e-01 84.5% 60.5%
4055467 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.71 64.0 4.80e-01 100.0% 56.6%
3832299 109.4.1.1959 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, TPR_At1g68980 0.70 62.0 3.66e-01 97.6% 16.2%
3349744 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.70 62.0 4.35e-01 100.0% 31.6%
3675450 109.4.1.621 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 0.69 61.0 4.80e-01 100.0% 46.9%
3361332 109.4.1.1330 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, PPR_long 0.68 60.0 3.98e-01 100.0% 24.1%
3673184 109.4.1.1256 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.68 59.0 3.59e-01 95.2% 21.7%
3274742 109.3.1.183 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF29088 0.68 61.0 4.23e-01 100.0% 30.7%
3807477 109.4.1.1282 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 0.67 59.0 4.24e-01 100.0% 33.5%
3302239 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.67 59.0 4.36e-01 100.0% 40.0%
3422293 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.67 57.0 5.32e-01 94.0% 77.1%
3376754 109.4.1.1336 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3 0.67 58.0 5.43e-01 100.0% 78.1%
3320780 109.4.1.1280 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long 0.66 60.0 4.20e-01 100.0% 35.0%
3328963 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.66 60.0 4.64e-01 100.0% 60.0%
3314794 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.66 59.0 4.29e-01 100.0% 37.4%
3808292 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.66 59.0 3.94e-01 100.0% 28.4%
3382098 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.66 59.0 5.17e-01 100.0% 71.2%
5023700 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.66 54.0 5.17e-01 88.1% 97.9%
3654095 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 56.0 5.07e-01 98.8% 71.7%
3645347 109.4.1.1295 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, TPR_24 0.65 59.0 4.17e-01 100.0% 34.5%
3465965 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.65 55.0 3.48e-01 100.0% 17.6%
3371510 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.65 57.0 3.74e-01 100.0% 21.9%
3328358 109.4.1.775 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 57.0 5.52e-01 100.0% 87.4%
3361493 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 58.0 4.76e-01 100.0% 54.8%
3355508 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.65 57.0 5.37e-01 100.0% 82.9%
3684464 109.4.1.775 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 58.0 3.90e-01 100.0% 27.5%
4167733 316.1.1.41 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF6036 0.65 56.0 4.34e-01 97.6% 82.1%
3824336 109.4.1.2310 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_3, E_motif 0.64 57.0 3.98e-01 100.0% 29.8%
3829288 109.4.1.775 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 57.0 4.46e-01 100.0% 47.0%
3645346 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.64 57.0 4.70e-01 100.0% 56.1%
3701336 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 57.0 4.72e-01 100.0% 78.7%
3337728 109.4.1.1258 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.64 57.0 4.11e-01 100.0% 34.7%
3349082 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.64 58.0 5.05e-01 100.0% 70.4%
3677996 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.64 57.0 4.34e-01 100.0% 44.0%
3457808 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 55.0 4.63e-01 100.0% 56.4%
3444013 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.64 57.0 4.68e-01 100.0% 59.4%
4224440 109.4.1.206 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › YfiO 0.63 49.0 4.65e-01 85.7% 70.0%
3593901 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 56.0 3.68e-01 100.0% 35.4%
3324469 109.4.1.1641 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3, PPR_long 0.62 55.0 4.06e-01 100.0% 38.7%
3453706 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.62 49.0 5.08e-01 85.7% 90.0%
3808017 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.61 51.0 4.38e-01 100.0% 56.4%
4433032 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.61 45.0 4.40e-01 78.6% 76.8%
3348685 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.61 54.0 4.17e-01 100.0% 44.3%
3657872 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 53.0 4.82e-01 98.8% 73.0%
4285641 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.59 45.0 4.32e-01 81.0% 77.9%
4504903 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.59 45.0 4.33e-01 81.0% 77.9%
5036349 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.59 44.0 4.31e-01 82.1% 78.9%
3301571 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.59 52.0 4.87e-01 100.0% 79.0%
3817871 109.4.1.1741 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_At1g68980 0.59 52.0 4.24e-01 100.0% 60.6%
4931897 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.59 44.0 4.18e-01 79.8% 72.0%
4974263 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.58 44.0 4.25e-01 79.8% 74.7%
5045230 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.58 44.0 4.46e-01 81.0% 84.7%
5020255 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.58 44.0 4.44e-01 81.0% 81.2%
3257613 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.58 49.0 4.66e-01 100.0% 78.1%
4948161 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.58 43.0 4.20e-01 79.8% 75.8%
5049036 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.58 43.0 4.21e-01 77.4% 76.7%
5046177 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.58 42.0 4.14e-01 78.6% 78.9%
3715165 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 50.0 3.38e-01 100.0% 25.5%
3901327 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.55 38.0 3.53e-01 73.8% 71.3%
4169641 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.54 41.0 4.06e-01 79.8% 78.9%
3959593 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 45.0 3.78e-01 100.0% 63.1%
3595345 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.52 34.0 3.40e-01 100.0% 63.3%
4927987 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.51 43.0 3.05e-01 100.0% 29.2%
D5 medium residues 381-443
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mkqA03 1.25.40.470 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 51.0 3.59e-01 88.9% 24.1%
2l9bA00 1.25.40.630 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 48.0 4.33e-01 93.7% 92.3%
6fbtA01 1.10.1240.20 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain 0.57 49.0 4.65e-01 100.0% 89.5%
6e3aA01 1.10.10.970 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA 2'-phosphotransferase, Tpt1/KptA family, N-terminal domain 0.55 40.0 3.79e-01 77.8% 100.0%
2rreA00 1.10.10.2010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 39.0 3.71e-01 74.6% 87.8%
3qldA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 38.0 2.89e-01 74.6% 34.2%
1tjcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 44.0 3.96e-01 100.0% 71.6%
1a87A02 1.10.490.30 Mainly Alpha › Orthogonal Bundle › Globin-like › Colicin 0.52 39.0 2.81e-01 84.1% 96.5%
2nxpB00 1.25.40.500 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain 0.51 38.0 3.16e-01 90.5% 48.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4118466 109.4.1.1780 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29347 0.77 65.0 4.00e-01 92.1% 29.2%
4225318 109.4.1.1780 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29347 0.75 63.0 4.24e-01 92.1% 46.7%
4192656 109.4.1.1780 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29347 0.72 63.0 3.87e-01 96.8% 23.1%
4527487 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 59.0 4.81e-01 98.4% 70.0%
3669338 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.61 53.0 3.56e-01 100.0% 36.4%
3711149 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.60 53.0 4.06e-01 100.0% 42.0%
None — 0.60 49.0 4.30e-01 96.8% 63.8%
3647434 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 47.0 4.13e-01 100.0% 60.0%
4862896 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.56 44.0 4.25e-01 100.0% 76.9%
3892460 548.1.1.1 ↗ alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain › GRIP 0.50 37.0 3.76e-01 82.5% 85.0%
D6 medium residues 444-522_546-569
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.52 26.0 3.00e-01 100.0% 64.9%
1lwdA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.51 39.0 2.66e-01 82.5% 72.6%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3194375 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.58 44.0 2.88e-01 81.6% 70.3%
3476361 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.51 35.0 3.38e-01 71.8% 88.3%
5025139 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.50 32.0 3.33e-01 75.7% 69.5%
5042605 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.50 32.0 3.35e-01 75.7% 71.0%
4961655 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.50 31.0 3.28e-01 76.7% 67.4%
D7 medium residues 570-622
PDB
Domain cluster: rep: hypothetical_protein_pdul_cds_901__YP_008319801__Pandoravirus_dulcis__1349409__D646-695