←Back to structures

hypothetical_protein_pmac_cds_546

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_546__YP_009481230__Pandoravirus_macleodensis__2107707

Identity

Accession:: YP_009481230 ↗
Protein ID:: hypothetical_protein_pmac_cds_546
Kingdom:: euk

Quality

77.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-191

PDB

Domain cluster: rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__01041__D28-149

D2 high residues 196-288

PDB

Domain cluster: rep: putative_EGF-like_domain-containing_protein__YP_003987180__Acanthamoeba_polyphaga_mimivirus__212035__D232-303

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF28386.1 best	BfoA_C	33.6	6.50e-08	94.6%	57.4%

D3 high residues 394-492

PDB

Domain cluster: rep: hypothetical_protein_pneo_cds_414__YP_009482024__Pandoravirus_neocaledonia__2107708__D403-494

D4 medium residues 289-349

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3wvtA02	2.10.50.10	Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2	0.72	50.0	5.62e-01	78.7%	95.7%
1z1yA01	2.90.20.10	Mainly Beta › Orthogonal Prism › Plasmodium vivax P25 fold › Plasmodium vivax P25 domain	0.58	42.0	3.14e-01	100.0%	28.2%
2wiiC02	2.10.70.10	Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1	0.57	42.0	4.20e-01	78.7%	91.8%
1orvA01	2.140.10.30	Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain	0.51	40.0	2.43e-01	90.2%	29.4%
2y69F00	2.60.11.10	Mainly Beta › Sandwich › Cytochrome C Oxidase; Chain F › Cytochrome c oxidase, subunit Vb	0.51	33.0	2.91e-01	73.8%	44.1%
6v06A04	2.10.70.10	Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1	0.51	37.0	3.74e-01	77.0%	90.0%
1mixA02	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.50	37.0	3.34e-01	96.7%	53.8%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3999808	389.2.1.3 ↗	few secondary structure elements › EGF-like › Serine protease inhibitors › Serine protease inhibitors › TIL_2	0.74	47.0	5.36e-01	77.0%	88.9%
3887145	389.1.3.0 ↗	few secondary structure elements › EGF-like › EGF-related › TNF receptor-like	0.70	49.0	5.49e-01	80.3%	100.0%
3577721	389.1.3.18 ↗	few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › EGF	0.70	48.0	5.36e-01	80.3%	95.6%
3879535	389.1.3.0 ↗	few secondary structure elements › EGF-like › EGF-related › TNF receptor-like	0.69	48.0	4.23e-01	77.0%	50.0%
3579538	389.1.1.152 ↗	few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Ephrin_rec_like, EGF_3	0.65	41.0	3.14e-01	80.3%	26.0%
3785536	211.1.1.0 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	0.59	38.0	3.97e-01	77.0%	72.7%
3261408	109.4.1.404 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fes1	0.58	35.0	2.15e-01	82.0%	9.1%
3443063	101.1.2.386 ↗	alpha arrays › HTH › HTH › winged helix domain › WH_DRP	0.57	36.0	2.62e-01	78.7%	21.7%
3993174	375.1.8.1 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Cytochrome c oxidase Subunit F › COX5B	0.55	36.0	3.62e-01	86.9%	66.7%
4013906	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.54	30.0	3.44e-01	95.1%	71.1%
5043775	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	36.0	2.81e-01	80.3%	30.7%
3220953	389.1.2.0 ↗	few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain	0.53	39.0	3.74e-01	78.7%	78.6%
3487471	375.1.8.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Cytochrome c oxidase Subunit F	0.53	35.0	3.11e-01	88.5%	45.2%
4223710	3054.1.1.0 ↗	alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol	0.52	35.0	3.07e-01	73.8%	96.4%
3805401	1.1.9.5 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg	0.51	41.0	2.86e-01	95.1%	91.4%
3223344	375.1.8.1 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Cytochrome c oxidase Subunit F › COX5B	0.51	35.0	3.14e-01	95.1%	48.9%
3585283	389.1.2.1 ↗	few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi	0.51	37.0	3.80e-01	78.7%	93.3%
3428777	812.1.1.0 ↗	a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain	0.50	30.0	3.27e-01	75.4%	72.0%