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hypothetical_protein_pmac_cds_575

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_575__YP_009481259__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481259 ↗
Protein ID:
hypothetical_protein_pmac_cds_575
Kingdom:
euk

Quality

66.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-106
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_18__YP_009481628__Pandoravirus_neocaledonia__2107708__D89-187
D2 medium residues 206-319
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_18__YP_009481628__Pandoravirus_neocaledonia__2107708__D319-380_399-442
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.62 42.0 4.92e-01 71.9% 100.0%
3fdjA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.59 41.0 3.99e-01 71.9% 85.2%
1c7sA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 31.0 3.81e-01 91.2% 92.4%
3pl5A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.55 38.0 3.74e-01 71.1% 81.0%
3jr7A03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.54 37.0 3.66e-01 70.2% 87.0%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.94e-01 93.0% 78.3%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 4.01e-01 86.0% 85.6%
2uurA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.43e-01 85.1% 75.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 32.0 3.63e-01 87.7% 83.1%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 32.0 2.90e-01 71.9% 42.1%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.54e-01 91.2% 97.7%
4bg8A01 3.30.420.430 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.51 36.0 3.46e-01 71.9% 96.1%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 35.0 3.84e-01 78.9% 94.2%
4mz2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 4.11e-01 89.5% 87.4%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.50 42.0 3.95e-01 91.2% 91.4%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 40.0 4.87e-01 78.9% 89.3%
3226497 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.61 37.0 3.71e-01 81.6% 58.3%
4009736 206.1.1.23 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › HipA_C 0.58 45.0 3.10e-01 81.6% 37.9%
3917289 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 46.0 4.00e-01 85.1% 92.8%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.58 34.0 4.15e-01 88.6% 92.9%
3910338 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 45.0 3.97e-01 84.2% 95.3%
3541447 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 44.0 3.78e-01 82.5% 89.4%
4026408 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.56 35.0 3.69e-01 72.8% 70.0%
5017958 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 43.0 3.95e-01 81.6% 88.7%
4170578 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.56 24.0 2.72e-01 87.7% 48.9%
4178970 4026.1.1.2 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Bud3_N 0.56 45.0 3.89e-01 86.0% 92.0%
3907645 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.55 42.0 3.70e-01 92.1% 53.1%
840 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.55 45.0 3.96e-01 93.0% 77.3%
5033562 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.54 28.0 3.31e-01 86.0% 70.0%
3865520 5.1.4.94 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Det1 0.54 43.0 2.82e-01 86.8% 85.9%
4026163 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.53 39.0 3.25e-01 78.1% 81.5%
3534125 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 42.0 3.40e-01 86.8% 71.6%
3492557 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.52 34.0 3.60e-01 78.1% 74.0%
3391671 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.51 42.0 3.83e-01 90.4% 80.0%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 28.0 3.48e-01 84.2% 100.0%
3391245 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.51 42.0 3.82e-01 90.4% 80.0%
3380828 5.1.3.131 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Det1 0.50 41.0 2.75e-01 86.8% 58.0%
3640086 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 40.0 2.84e-01 86.0% 95.0%
3935302 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 38.0 3.40e-01 80.7% 100.0%
4600292 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.50 39.0 3.33e-01 86.0% 78.5%
3534889 5.1.5.95 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Det1 0.50 40.0 2.70e-01 86.8% 52.2%