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hypothetical_protein_pmac_cds_589
Euk-VirPandoravirus_macleodensis
hypothetical_protein_pmac_cds_589__YP_009481273__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009481273 ↗
- Protein ID:
- hypothetical_protein_pmac_cds_589
- Kingdom:
- euk
Quality
74.8
mean pLDDT
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 10-158
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dcjA00 | 3.30.110.40 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain | 0.63 | 30.0 | 4.11e-01 | 75.8% | 86.4% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.61 | 35.0 | 4.20e-01 | 78.5% | 86.2% |
| 4nzrM03 | 3.30.110.180 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › | 0.60 | 42.0 | 4.59e-01 | 71.8% | 91.1% |
| 1jg5A00 | 3.30.1410.10 | Alpha Beta › 2-Layer Sandwich › Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K › GTP cyclohydrolase I feedback regulatory protein GFRP | 0.55 | 25.0 | 3.26e-01 | 76.5% | 75.9% |
| 2xigA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 33.0 | 4.12e-01 | 77.2% | 98.9% |
| 5cm2Z00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 40.0 | 3.79e-01 | 78.5% | 89.1% |
| 3eb2A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 45.0 | 3.72e-01 | 99.3% | 53.1% |
| 2yx0A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 46.0 | 3.59e-01 | 100.0% | 75.9% |
| 2vz9A05 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 38.0 | 3.17e-01 | 78.5% | 62.6% |
| 3dh0B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 38.0 | 3.57e-01 | 79.2% | 82.1% |
| 2o5aA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.50 | 28.0 | 3.34e-01 | 77.2% | 79.4% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4988529 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.67 | 33.0 | 4.31e-01 | 75.8% | 83.3% |
| 4992248 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.67 | 31.0 | 4.52e-01 | 75.8% | 95.7% |
| 4986893 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.64 | 32.0 | 4.45e-01 | 77.2% | 96.0% |
| 5012030 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.63 | 30.0 | 4.33e-01 | 75.2% | 97.1% |
| 5026235 | 304.165.1.5 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein Ta1207 › Uncharacterized protein Ta1207 › HVO_A0563_N | 0.63 | 34.0 | 3.47e-01 | 98.0% | 53.1% |
| 4991247 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.63 | 30.0 | 4.36e-01 | 75.8% | 98.6% |
| 5075009 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 34.0 | 4.14e-01 | 86.6% | 86.3% |
| 5029803 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 38.0 | 4.07e-01 | 86.6% | 73.8% |
| 3945466 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 38.0 | 4.62e-01 | 100.0% | 98.0% |
| 4927427 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 32.0 | 3.91e-01 | 71.1% | 87.8% |
| 3518086 | 246.3.1.4 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 | 0.55 | 32.0 | 2.66e-01 | 77.2% | 31.1% |
| 3732238 | 246.2.1.19 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PGA_cap | 0.55 | 50.0 | 3.75e-01 | 100.0% | 79.1% |
| 5058268 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.55 | 31.0 | 3.49e-01 | 88.6% | 71.3% |
| 3600603 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 29.0 | 3.73e-01 | 72.5% | 90.6% |
| 3473498 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 31.0 | 3.80e-01 | 73.2% | 97.6% |
| 5049009 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 40.0 | 3.87e-01 | 82.6% | 82.9% |