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hypothetical_protein_pmac_cds_616

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_616__YP_009481300__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481300 ↗
Protein ID:
hypothetical_protein_pmac_cds_616
Kingdom:
euk

Quality

63.0 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 65-131_286-301_340-381
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF19195.6 best DUF5870 139.0 3.10e-40 56.0% 14.3%
PF19195.6 DUF5870 74.9 8.30e-21 34.4% 8.6%
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3sfvB02 6.10.140.2010 Special › Helix non-globular › Helix Hairpins › 0.85 52.0 4.38e-01 94.4% 39.0%
3vkgA12 1.10.287.2610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.83 55.0 4.51e-01 100.0% 39.5%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.82 54.0 6.16e-01 100.0% 89.4%
3k29A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 53.0 4.80e-01 100.0% 51.6%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.79 47.0 6.06e-01 88.0% 100.0%
1wleA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.79 55.0 5.72e-01 100.0% 77.2%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.79 54.0 5.83e-01 98.4% 82.1%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.77 50.0 4.81e-01 100.0% 57.7%
2p7vA00 1.20.120.1370 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Regulator of RNA polymerase sigma(70) subunit, domain 4 0.75 46.0 4.30e-01 93.6% 50.3%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.75 53.0 5.62e-01 97.6% 81.2%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.74 49.0 4.62e-01 100.0% 56.5%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.74 45.0 5.48e-01 95.2% 96.2%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 53.0 4.21e-01 100.0% 39.2%
2uuiA00 1.20.120.550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain 0.72 43.0 3.98e-01 92.0% 47.1%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.72 47.0 4.37e-01 100.0% 52.2%
3u0cA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.71 53.0 4.96e-01 100.0% 63.6%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.71 53.0 5.94e-01 94.4% 100.0%
3g67A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.71 47.0 3.93e-01 98.4% 39.9%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.70 44.0 5.24e-01 96.0% 96.3%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 37.0 4.28e-01 82.4% 71.7%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 52.0 5.56e-01 100.0% 90.8%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 52.0 5.68e-01 100.0% 95.3%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 55.0 4.36e-01 100.0% 45.3%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.67 35.0 2.93e-01 89.6% 30.8%
6wngA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.67 48.0 3.66e-01 94.4% 33.9%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.67 45.0 5.14e-01 98.4% 95.6%
6q45G01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.65 48.0 4.56e-01 100.0% 65.1%
2qe7G01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.65 44.0 4.93e-01 93.6% 88.7%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 46.0 4.95e-01 99.2% 87.6%
3teqB00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 50.0 5.44e-01 100.0% 100.0%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 53.0 4.72e-01 100.0% 64.2%
1i4dA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.63 51.0 4.40e-01 100.0% 56.9%
2efkA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.62 51.0 3.91e-01 98.4% 41.2%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 47.0 4.35e-01 99.2% 62.9%
6vq6G02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.61 54.0 4.69e-01 93.6% 95.1%
6gy8A01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.60 56.0 4.03e-01 100.0% 75.6%
2y44A00 1.20.1260.80 Mainly Alpha › Up-down Bundle › Ferritin › 0.59 54.0 4.74e-01 99.2% 75.0%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 53.0 4.63e-01 100.0% 72.3%
2oexA02 1.20.140.50 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › alix/aip1 like domains 0.58 51.0 4.36e-01 100.0% 59.9%
1dofA01 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.57 47.0 3.75e-01 98.4% 45.1%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.56 25.0 3.30e-01 81.6% 74.3%
4wpeA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.56 48.0 3.70e-01 99.2% 42.5%
3rq1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 35.0 3.31e-01 78.4% 52.9%
4nx9A01 1.20.1330.10 Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain 0.54 50.0 4.61e-01 98.4% 98.7%
2rd0B00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 49.0 4.74e-01 100.0% 91.4%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3341646 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.83 59.0 4.33e-01 100.0% 31.4%
3292425 3291.1.1.4 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 0.75 56.0 4.66e-01 100.0% 46.8%
3599226 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.75 49.0 4.50e-01 100.0% 51.2%
3719459 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.75 50.0 4.33e-01 100.0% 45.4%
3495149 3285.1.1.1 ↗ alpha duplicates or obligate multimers › Alix V domain › Alix V domain › Alix V domain › ALIX_LYPXL_bnd 0.74 51.0 3.68e-01 100.0% 26.6%
3581368 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.73 54.0 5.07e-01 100.0% 63.3%
3240634 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 53.0 4.93e-01 100.0% 60.6%
3638435 1073.1.1.14 ↗ alpha arrays › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › Mitochondrial calcium uniporter (MCU) › LMBR1 0.72 55.0 5.76e-01 97.6% 86.8%
3704105 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.71 55.0 4.98e-01 100.0% 62.5%
3596922 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.69 55.0 5.04e-01 99.2% 65.2%
4076629 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.69 57.0 4.26e-01 100.0% 38.9%
4963832 5069.1.1.107 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Exosortase_EpsH 0.69 39.0 3.04e-01 86.4% 25.9%
3596488 3737.1.1.0 ↗ alpha duplicates or obligate multimers › Major allergen Bla g 1 tandem repeats › Major allergen Bla g 1 tandem repeats › Major allergen Bla g 1 tandem repeats 0.68 56.0 5.63e-01 100.0% 85.6%
4629029 3285.1.1.1 ↗ alpha duplicates or obligate multimers › Alix V domain › Alix V domain › Alix V domain › ALIX_LYPXL_bnd 0.68 55.0 4.71e-01 100.0% 55.8%
4945785 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.68 47.0 4.19e-01 100.0% 50.3%
3939311 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.68 53.0 5.63e-01 100.0% 91.8%
4082395 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.67 42.0 3.71e-01 94.4% 43.3%
3916642 192.2.1.56 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF9 0.66 51.0 4.85e-01 100.0% 68.7%
3908132 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 48.0 3.78e-01 98.4% 37.4%
4004805 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 56.0 4.51e-01 100.0% 50.5%
3445440 3755.4.1.17 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Rx_N 0.64 45.0 4.26e-01 99.2% 60.0%
3470807 3755.3.1.49 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › GPHR_N 0.63 47.0 4.00e-01 100.0% 48.5%
4991922 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.63 57.0 4.82e-01 100.0% 61.5%
3916825 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 52.0 4.85e-01 100.0% 72.0%
3715891 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.63 49.0 4.43e-01 99.2% 61.8%
3566283 4970.1.1.17 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › CpG_bind_C 0.62 56.0 5.37e-01 98.4% 83.4%
3938473 3755.3.1.347 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CDK5RAP3 0.62 49.0 3.89e-01 98.4% 40.5%
4457710 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 51.0 5.19e-01 100.0% 90.0%
4018104 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.62 59.0 4.32e-01 100.0% 85.4%
3340649 3926.1.1.0 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D 0.61 57.0 5.32e-01 100.0% 86.7%
5037750 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.61 57.0 4.85e-01 100.0% 64.6%
3949412 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.61 58.0 4.97e-01 100.0% 84.3%
5078639 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.60 55.0 4.78e-01 100.0% 71.1%
4324117 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.60 56.0 3.96e-01 100.0% 91.7%
5056727 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.59 54.0 4.55e-01 100.0% 67.3%
3699472 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 54.0 3.56e-01 100.0% 67.3%
4028552 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 55.0 4.32e-01 100.0% 52.7%
5053535 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.58 55.0 4.25e-01 100.0% 91.6%
4118829 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 54.0 5.16e-01 99.2% 87.9%
4265142 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 53.0 4.94e-01 100.0% 81.3%
3173926 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 52.0 4.54e-01 95.2% 88.3%
4953241 3755.3.1.127 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.57 54.0 4.91e-01 100.0% 94.4%
5039314 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.57 53.0 4.86e-01 98.4% 93.5%
3371570 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 53.0 4.93e-01 100.0% 83.3%
3611420 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 52.0 5.13e-01 97.6% 99.2%
3241070 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.56 47.0 3.72e-01 89.6% 71.4%
3168493 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.56 52.0 4.69e-01 100.0% 76.4%
4457443 3285.1.1.1 ↗ alpha duplicates or obligate multimers › Alix V domain › Alix V domain › Alix V domain › ALIX_LYPXL_bnd 0.56 51.0 4.22e-01 100.0% 57.7%
3598168 3755.1.1.0 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.56 51.0 4.63e-01 100.0% 75.2%
4775818 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 50.0 4.27e-01 98.4% 63.7%
3173424 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 50.0 3.38e-01 100.0% 40.4%
3415741 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 50.0 4.79e-01 100.0% 86.9%
3217000 601.2.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr 0.54 50.0 4.69e-01 99.2% 84.0%
5036825 602.1.1.1 ↗ alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.53 49.0 3.64e-01 99.2% 95.1%
3489283 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.53 47.0 4.61e-01 96.0% 92.6%
D2 medium residues 430-534
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19195.6 best DUF5870 232.9 1.00e-68 100.0% 21.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3388162 205.1.1.28 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_5 0.58 42.0 2.97e-01 73.3% 37.5%
3299872 5063.1.1.3 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › NADH-u_ox-rdase 0.58 40.0 4.37e-01 72.4% 87.1%
3827397 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.57 38.0 3.77e-01 72.4% 63.5%
3193232 243.9.1.2 ↗ a+b two layers › Cystatin-like › Nuclease A inhibitor (NuiA)-related › Nuclease A inhibitor (NuiA)-related › Maf1 0.56 36.0 3.08e-01 88.6% 38.9%