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hypothetical_protein_pmac_cds_644

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_644__YP_009481328__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481328 ↗
Protein ID:
hypothetical_protein_pmac_cds_644
Kingdom:
euk

Quality

67.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-121
PDB
D2 high residues 179-275
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hciC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.71 51.0 3.75e-01 74.2% 93.5%
2f1rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 48.0 4.09e-01 70.1% 95.3%
1reqA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.67 48.0 4.07e-01 75.3% 73.8%
3n2oA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.63 48.0 3.47e-01 81.4% 95.4%
3a0rA03 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.62 50.0 4.35e-01 97.9% 57.5%
6qrjA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.62 49.0 4.29e-01 91.8% 56.9%
7n0eB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.61 50.0 4.62e-01 90.7% 69.7%
1e9fA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 53.0 4.19e-01 96.9% 95.0%
3nzpB02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.60 50.0 3.74e-01 93.8% 98.5%
1id0A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.60 46.0 4.04e-01 94.8% 54.8%
4da9B00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 41.0 3.22e-01 72.2% 88.9%
3ehgA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 42.0 3.92e-01 87.6% 61.6%
1ej0A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 39.0 3.22e-01 71.1% 93.9%
4ciuA04 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 47.0 4.84e-01 95.9% 97.8%
6g4gD01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.56 47.0 3.53e-01 93.8% 82.3%
1r6bX05 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 47.0 4.71e-01 94.8% 93.9%
3e11A00 3.30.2010.20 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.54 37.0 3.58e-01 72.2% 88.6%
4ubtD00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 43.0 2.99e-01 92.8% 76.1%
3zm6A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 34.0 2.69e-01 70.1% 29.6%
1u0mA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 37.0 3.29e-01 76.3% 77.4%
3fn5B00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.51 41.0 3.52e-01 88.7% 67.5%
6upsA01 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.51 36.0 3.05e-01 97.9% 45.2%
7n7zA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 37.0 3.37e-01 78.4% 92.7%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992252 2011.2.1.21 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › DUF1512_C 0.69 51.0 4.23e-01 78.4% 97.6%
3492934 312.1.1.19 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › PF26216 0.68 47.0 4.01e-01 71.1% 51.6%
5065439 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.67 45.0 3.79e-01 70.1% 92.1%
5073237 2003.1.5.62 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.64 46.0 3.36e-01 75.3% 100.0%
4947938 2011.2.1.21 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › DUF1512_C 0.64 52.0 4.30e-01 89.7% 98.9%
None — 0.64 44.0 3.06e-01 72.2% 52.6%
4483245 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.62 43.0 2.78e-01 71.1% 37.8%
None — 0.62 43.0 3.00e-01 72.2% 53.6%
4946421 2004.1.1.120 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII 0.61 45.0 2.74e-01 78.4% 39.1%
5074511 2011.2.1.21 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › DUF1512_C 0.60 46.0 3.92e-01 83.5% 97.1%
3219587 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.60 49.0 4.39e-01 89.7% 73.6%
3722183 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.60 44.0 3.23e-01 77.3% 48.5%
3212596 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.60 53.0 4.53e-01 100.0% 80.5%
3236033 3930.1.1.0 ↗ alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.59 39.0 3.43e-01 99.0% 45.5%
3235186 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.57 46.0 4.52e-01 89.7% 99.1%
4927949 2006.1.1.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.57 40.0 3.04e-01 73.2% 58.7%
4233442 304.4.1.54 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless 0.56 38.0 3.58e-01 73.2% 55.8%
3242288 2008.6.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.56 38.0 3.15e-01 71.1% 84.4%
4509437 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.55 40.0 3.86e-01 77.3% 95.7%
4503469 3351.1.1.0 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 0.54 39.0 3.89e-01 77.3% 94.3%
3021706 309.1.1.0 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.54 36.0 3.12e-01 99.0% 43.3%
3499766 3914.1.1.0 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain 0.54 40.0 2.37e-01 77.3% 68.2%
5045943 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.53 49.0 4.17e-01 100.0% 94.2%
4304211 3351.1.1.0 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 0.53 39.0 3.77e-01 79.4% 88.7%
4089924 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.53 41.0 3.07e-01 84.5% 92.8%
3956183 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.52 38.0 3.10e-01 78.4% 56.9%
4201251 2006.1.1.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP 0.51 35.0 2.60e-01 71.1% 48.0%
4509331 314.1.1.1 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 0.51 45.0 3.03e-01 97.9% 35.9%
2618332 7581.1.1.15 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_C_1 0.50 38.0 3.25e-01 83.5% 66.9%
4994641 304.19.1.1 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.50 39.0 3.95e-01 81.4% 95.8%
D3 medium residues 328-415
PDB
Domain cluster: rep: hypothetical_protein_TW95_gp1137__YP_009120106__Pandoravirus_inopinatum__1605721__D229-297
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19178.6 best DUF5860 89.7 3.00e-25 100.0% 54.5%
D4 medium residues 426-521
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_643__YP_009482253__Pandoravirus_neocaledonia__2107708__D95-188
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19178.6 best DUF5860 85.9 4.40e-24 63.5% 36.5%