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hypothetical_protein_pmac_cds_661

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_661__YP_009481345__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481345 ↗
Protein ID:
hypothetical_protein_pmac_cds_661
Kingdom:
euk

Quality

54.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 475-554
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_1040__YP_008438307__Pandoravirus_salinus__1349410__D405-466
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19253.5 best DUF5900 93.0 1.70e-26 83.8% 65.3%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yfqB01 1.10.8.1210 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 36.0 4.34e-01 83.7% 86.5%
1kv9A02 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.63 46.0 4.21e-01 76.2% 84.5%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.57 50.0 4.47e-01 97.5% 88.5%
1uxdA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 33.0 3.68e-01 81.2% 78.0%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.55 38.0 4.11e-01 71.2% 98.5%
3qcpA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 44.0 3.50e-01 88.7% 91.2%
7cm3A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 43.0 3.47e-01 86.3% 80.3%
1t7pA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.53 41.0 3.35e-01 85.0% 80.9%
1a1vA03 1.10.820.10 Mainly Alpha › Orthogonal Bundle › RNA Helicase; Chain A, domain 3 › RNA Helicase Chain A , domain 3 0.52 40.0 3.27e-01 85.0% 61.5%
2pziB03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 40.0 3.28e-01 86.3% 84.7%
1jc4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 40.0 3.42e-01 92.5% 100.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5076041 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 4.76e-01 88.7% 84.2%
3702557 3945.1.1.0 ↗ alpha superhelices › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain 0.64 40.0 3.45e-01 92.5% 39.2%
4061821 604.9.1.1 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.61 42.0 4.29e-01 91.3% 71.2%
4947811 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 4.18e-01 82.5% 83.5%
3326759 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.58 45.0 4.61e-01 90.0% 90.7%
4608174 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.58 45.0 4.42e-01 90.0% 76.7%
4344712 284.1.3.1 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.58 47.0 4.40e-01 90.0% 73.0%
4983539 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.58 51.0 3.51e-01 96.2% 73.8%
4631930 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.57 45.0 3.83e-01 83.7% 70.8%
3733936 11.8.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.57 39.0 2.97e-01 71.2% 54.4%
3187249 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 50.0 3.13e-01 97.5% 39.1%
4137619 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.56 42.0 3.66e-01 82.5% 69.2%
2048355 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.55 41.0 3.53e-01 80.0% 68.8%
3925690 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.55 44.0 4.54e-01 87.5% 96.0%
1820963 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.55 44.0 3.50e-01 88.7% 91.2%
3282580 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.54 43.0 3.88e-01 90.0% 64.3%
7496 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.54 41.0 3.51e-01 82.5% 69.0%
4152050 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.54 45.0 3.57e-01 92.5% 63.0%
4547856 207.12.1.5 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Protein M antibody-binding region › Protein M antibody-binding region › PF26360, PF26361, PF26364 0.52 44.0 2.89e-01 98.8% 39.8%
4649465 207.12.1.4 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Protein M antibody-binding region › Protein M antibody-binding region › PF26360, PF26364 0.52 44.0 3.00e-01 98.8% 47.9%
3970156 286.1.1.0 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.52 42.0 3.72e-01 88.7% 77.4%
1107970 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.52 42.0 3.62e-01 88.7% 71.2%
1002449 3662.1.1.1 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC3 0.51 39.0 3.45e-01 83.7% 93.4%
3608365 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 42.0 2.52e-01 96.2% 21.7%
4540822 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.51 40.0 3.47e-01 90.0% 80.0%
5034698 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.51 42.0 3.58e-01 91.3% 70.0%