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hypothetical_protein_pmac_cds_686

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_686__YP_009481370__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481370 ↗
Protein ID:
hypothetical_protein_pmac_cds_686
Kingdom:
euk

Quality

71.1 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (47 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-19_43-110
PDB
Domain cluster: rep: F-box_incomplete_domain_containing_protein__YP_008318724__Pandoravirus_dulcis__1349409__D16-76
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12937.13 best F-box-like 28.1 1.90e-06 56.3% 78.7%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ce9A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.52 41.0 3.37e-01 93.1% 97.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4003951 145.1.1.48 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › ARM_FBXO47 0.66 54.0 3.52e-01 100.0% 21.1%
3259075 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.58 48.0 5.07e-01 98.9% 98.7%
3359835 1076.1.1.1 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.55 46.0 3.49e-01 98.9% 82.9%
3442747 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.54 48.0 4.67e-01 96.6% 90.5%
3650817 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.52 46.0 3.01e-01 95.4% 36.1%
3353640 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.52 38.0 4.08e-01 93.1% 97.1%
D2 medium residues 145-230
PDB
D3 medium residues 265-371
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009483228__Pandoravirus_quercus__2107709__D287-392
D4 medium residues 391-515_540-579_624-648
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_1275__YP_009430140__Pandoravirus_salinus__1349410__D406-569
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ebbA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 53.0 4.72e-01 98.4% 62.9%
1sz9C00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.63 45.0 5.09e-01 80.5% 97.1%
2w3cA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.62 54.0 4.81e-01 100.0% 66.0%
6hftA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 39.0 4.57e-01 88.9% 100.0%
2w3cA02 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 51.0 4.50e-01 96.8% 95.5%
4ga0A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 36.0 4.09e-01 91.1% 86.7%
4f5cA04 1.25.50.20 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › 0.55 43.0 3.61e-01 100.0% 47.0%
3qnkC00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 47.0 3.47e-01 93.2% 88.3%
7dvqK01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.54 43.0 4.52e-01 100.0% 93.6%
4me2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 47.0 4.75e-01 98.9% 94.8%
4d49A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.53 47.0 4.41e-01 97.4% 81.1%
8bfiB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 45.0 3.91e-01 93.7% 84.5%
7zcvA02 1.25.40.400 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 43.0 4.24e-01 91.1% 100.0%
3qxlA00 1.10.840.10 Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain 0.51 37.0 3.43e-01 74.2% 67.8%
4wnfA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 43.0 3.95e-01 91.1% 76.1%
4c0eA02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 46.0 4.37e-01 98.4% 82.7%
4g26A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 46.0 4.00e-01 100.0% 78.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3615131 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 48.0 3.55e-01 100.0% 29.8%
3456202 109.4.1.1261 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.63 46.0 3.94e-01 99.5% 48.3%
3673084 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 46.0 4.70e-01 100.0% 77.3%
3350508 109.4.1.1257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2 0.61 41.0 4.53e-01 98.9% 83.9%
3683655 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.60 41.0 4.64e-01 99.5% 91.0%
3334415 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.60 40.0 4.62e-01 98.9% 92.9%
3336338 109.4.1.1330 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_3, PPR_long 0.59 40.0 4.61e-01 98.4% 94.1%
3817872 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.59 48.0 4.52e-01 100.0% 71.6%
3941363 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 50.0 4.74e-01 91.1% 92.4%
3653516 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.58 44.0 4.51e-01 100.0% 81.6%
3364209 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.58 39.0 3.80e-01 76.8% 60.0%
3307625 109.4.1.1779 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_3 0.58 42.0 4.34e-01 100.0% 80.0%
3583099 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 49.0 4.61e-01 91.1% 92.6%
3375981 109.4.1.1277 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 0.55 43.0 4.05e-01 100.0% 67.4%
3810597 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.55 41.0 4.16e-01 100.0% 75.8%
3210379 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.55 46.0 2.89e-01 90.0% 42.7%
3328425 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.55 41.0 3.22e-01 76.8% 36.1%
3309198 109.4.1.2957 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_At1g68980 0.54 49.0 4.05e-01 96.8% 85.5%
3651415 109.4.1.1282 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 0.53 40.0 3.98e-01 86.8% 74.1%
3673345 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.52 40.0 4.25e-01 86.8% 90.0%
3816498 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.51 42.0 3.48e-01 87.9% 49.1%
4954273 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.51 41.0 3.92e-01 88.4% 71.6%
D5 medium residues 649-703
PDB
Domain cluster: rep: hypothetical_protein_pneo_cds_684__YP_009482294__Pandoravirus_neocaledonia__2107708__D651-700