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hypothetical_protein_pmac_cds_729
Euk-VirPandoravirus_macleodensis
hypothetical_protein_pmac_cds_729__YP_009481413__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009481413 ↗
- Protein ID:
- hypothetical_protein_pmac_cds_729
- Kingdom:
- euk
Quality
70.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 74-173
Domain cluster:
rep: hypothetical_protein_pmac_cds_562__YP_009481246__Pandoravirus_macleodensis__2107707__D114-217
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ivxB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.64 | 46.0 | 4.15e-01 | 100.0% | 54.3% |
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.62 | 38.0 | 4.11e-01 | 92.0% | 74.7% |
| 4akgA06 | 1.10.8.710 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain | 0.60 | 44.0 | 4.34e-01 | 97.0% | 72.0% |
| 1o5hA00 | 1.20.120.680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle | 0.55 | 43.0 | 3.43e-01 | 82.0% | 86.0% |
| 3qwlA03 | 1.10.472.80 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 | 0.55 | 42.0 | 3.89e-01 | 94.0% | 62.5% |
| 1wmgA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 39.0 | 4.08e-01 | 76.0% | 85.6% |
| 1gqeA01 | 1.20.58.410 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Release factor | 0.54 | 41.0 | 3.92e-01 | 79.0% | 100.0% |
| 3ez2A01 | 1.10.1660.30 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.53 | 33.0 | 3.79e-01 | 88.0% | 87.1% |
| 6p73A02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 41.0 | 3.67e-01 | 89.0% | 58.0% |
| 4hzdB01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.52 | 44.0 | 4.01e-01 | 95.0% | 95.6% |
| 4nleA02 | 1.10.275.60 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.52 | 36.0 | 3.35e-01 | 92.0% | 54.5% |
| 3d8bB02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 36.0 | 3.96e-01 | 82.0% | 89.0% |
| 1f16A00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.51 | 43.0 | 3.58e-01 | 97.0% | 92.7% |
| 2vk9A03 | 1.10.3730.30 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.51 | 35.0 | 3.58e-01 | 72.0% | 80.6% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 30.0 | 3.09e-01 | 89.0% | 57.6% |
| 1l3lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 28.0 | 3.34e-01 | 75.0% | 84.1% |
| 3dtoA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.50 | 40.0 | 4.24e-01 | 85.0% | 100.0% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3822810 | 1128.1.1.13 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › PF30094 | 0.68 | 54.0 | 5.46e-01 | 98.0% | 85.0% |
| 3735597 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 39.0 | 4.21e-01 | 90.0% | 72.9% |
| 3173370 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.59 | 47.0 | 4.79e-01 | 97.0% | 90.5% |
| 3270603 | 5001.1.1.81 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › THH1_TOM1-3_dom | 0.59 | 44.0 | 3.30e-01 | 80.0% | 34.7% |
| 2659168 | 625.1.1.1 ↗ | alpha arrays › Hepatitis B viral capsid (hbcag) › Hepatitis B viral capsid (hbcag) › Hepatitis B viral capsid (hbcag) › Hepatitis_core | 0.59 | 47.0 | 4.06e-01 | 86.0% | 95.5% |
| 3699966 | 148.1.3.10 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 | 0.58 | 43.0 | 4.21e-01 | 96.0% | 71.8% |
| 3670838 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.57 | 33.0 | 2.37e-01 | 93.0% | 19.0% |
| 3724273 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 39.0 | 4.18e-01 | 90.0% | 81.2% |
| 4011098 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 38.0 | 3.93e-01 | 98.0% | 71.6% |
| 3938853 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.56 | 45.0 | 3.48e-01 | 87.0% | 85.7% |
| 3217811 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.55 | 45.0 | 3.93e-01 | 88.0% | 87.3% |
| 3231196 | 5001.1.1.16 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srt | 0.55 | 40.0 | 2.95e-01 | 79.0% | 35.0% |
| 3500357 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 47.0 | 4.24e-01 | 98.0% | 78.6% |
| 5024421 | 133.2.1.1 ↗ | alpha bundles › DH domain-like › Methenyltetrahydrofolate cyclohydrolase-like › Methenyltetrahydrofolate cyclohydrolase-like › FTCD_C | 0.54 | 43.0 | 3.43e-01 | 86.0% | 87.5% |
| 3500692 | 2498.1.1.9 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 | 0.52 | 43.0 | 3.17e-01 | 92.0% | 84.9% |
| 1585161 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.52 | 41.0 | 3.46e-01 | 86.0% | 95.3% |
| 5047959 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.50 | 43.0 | 3.61e-01 | 100.0% | 54.3% |
D2
high
residues 211-308
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kl8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.66 | 35.0 | 3.71e-01 | 100.0% | 57.6% |
| 3c3pA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 30.0 | 2.38e-01 | 100.0% | 22.2% |
| 5wpjA02 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.60 | 41.0 | 3.97e-01 | 100.0% | 63.0% |
| 6w72A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 33.0 | 3.01e-01 | 100.0% | 38.9% |
| 1x60A01 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.58 | 32.0 | 3.70e-01 | 100.0% | 73.6% |
| 1lfwA03 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 30.0 | 3.13e-01 | 100.0% | 51.1% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 32.0 | 3.60e-01 | 100.0% | 70.3% |
| 2cveA02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 28.0 | 3.29e-01 | 100.0% | 65.2% |
| 4r3aA02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.57 | 34.0 | 3.00e-01 | 100.0% | 39.4% |
| 1x0pA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 31.0 | 3.22e-01 | 100.0% | 53.1% |
| 4wxaA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.56 | 33.0 | 3.50e-01 | 100.0% | 66.7% |
| 3oq3B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 31.0 | 3.06e-01 | 100.0% | 50.5% |
| 1g84A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 30.0 | 2.98e-01 | 100.0% | 48.6% |
| 4bxiA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.54 | 33.0 | 2.98e-01 | 100.0% | 40.4% |
| 4k59A00 | 2.60.40.4380 | Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA | 0.54 | 30.0 | 3.51e-01 | 96.9% | 78.8% |
| 4kp4A02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.53 | 37.0 | 3.22e-01 | 100.0% | 48.0% |
| 5idmA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 36.0 | 2.96e-01 | 100.0% | 39.0% |
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.52 | 34.0 | 3.45e-01 | 100.0% | 65.0% |
| 7zp0A01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 36.0 | 3.21e-01 | 100.0% | 49.3% |
| 3go9A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 42.0 | 3.36e-01 | 92.9% | 72.4% |
| 2p0lA00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.50 | 38.0 | 2.84e-01 | 80.6% | 55.6% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3737998 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.70 | 33.0 | 3.60e-01 | 100.0% | 51.8% |
| 4599652 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.68 | 34.0 | 3.75e-01 | 100.0% | 57.5% |
| 4988628 | 328.5.1.6 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › DUF2249 | 0.65 | 29.0 | 3.52e-01 | 100.0% | 61.5% |
| 4956949 | 328.5.1.1 ↗ | a+b two layers › IF3-like › SirA-like › SirA-like › TusA | 0.65 | 30.0 | 3.45e-01 | 100.0% | 56.8% |
| 4352897 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.64 | 33.0 | 3.75e-01 | 100.0% | 64.0% |
| 1211839 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.63 | 35.0 | 3.56e-01 | 100.0% | 53.1% |
| 3934872 | 3122.1.1.2 ↗ | a+b complex topology › MESD › MESD › MESD › SCVP | 0.62 | 39.0 | 3.88e-01 | 100.0% | 59.0% |
| 3164555 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 38.0 | 3.31e-01 | 100.0% | 40.7% |
| 3914050 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.60 | 33.0 | 3.57e-01 | 100.0% | 61.2% |
| 4642619 | 301.8.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS | 0.55 | 43.0 | 3.74e-01 | 83.7% | 72.7% |
| 2591304 | 2003.1.5.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD | 0.55 | 31.0 | 3.48e-01 | 100.0% | 74.3% |
| 3960673 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.54 | 28.0 | 3.34e-01 | 88.8% | 73.8% |
| 3838808 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.53 | 37.0 | 3.25e-01 | 100.0% | 48.3% |
| 3967685 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.53 | 37.0 | 3.14e-01 | 70.4% | 96.8% |
| 3589904 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.53 | 36.0 | 3.09e-01 | 71.4% | 97.5% |
| 4481260 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.52 | 37.0 | 3.22e-01 | 100.0% | 48.0% |
| 4276962 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.52 | 36.0 | 3.11e-01 | 100.0% | 44.4% |
| 3933916 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.51 | 42.0 | 3.52e-01 | 89.8% | 93.5% |
| 5030570 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.51 | 40.0 | 3.42e-01 | 85.7% | 84.8% |
| 4140750 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.51 | 34.0 | 3.00e-01 | 100.0% | 46.2% |
| 5026329 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 28.0 | 3.40e-01 | 95.9% | 86.7% |