←Back to structures
hypothetical_protein_pmac_cds_749
Euk-VirPandoravirus_macleodensis
hypothetical_protein_pmac_cds_749__YP_009481433__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009481433 ↗
- Protein ID:
- hypothetical_protein_pmac_cds_749
- Kingdom:
- euk
Quality
70.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-114
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.65 | 46.0 | 3.47e-01 | 76.1% | 55.1% |
| 7s2iA01 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.65 | 45.0 | 3.25e-01 | 72.8% | 38.2% |
| 4q7qB00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.61 | 44.0 | 3.26e-01 | 77.2% | 45.9% |
| 7wwfA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 39.0 | 2.82e-01 | 70.7% | 70.4% |
| 1a9xB02 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.56 | 44.0 | 3.36e-01 | 85.9% | 50.0% |
| 3c5qA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.55 | 46.0 | 3.46e-01 | 94.6% | 94.6% |
| 3floB00 | 1.10.3200.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger | 0.53 | 36.0 | 2.99e-01 | 70.7% | 96.1% |
| 1tufA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.53 | 45.0 | 3.34e-01 | 96.7% | 93.0% |
| 2v72A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 41.0 | 3.68e-01 | 91.3% | 97.1% |
| 3nwsA01 | 2.40.50.800 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 37.0 | 3.23e-01 | 100.0% | 50.4% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4475641 | 2003.1.5.363 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020, Methyltransf_11, Methyltrans_SAM | 0.59 | 43.0 | 2.72e-01 | 78.3% | 27.8% |
| 4442893 | 2003.1.5.138 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020+Methyltrans_SAM | 0.57 | 41.0 | 2.62e-01 | 78.3% | 26.4% |
| 3608665 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.53 | 34.0 | 2.97e-01 | 81.5% | 42.1% |
| 4022610 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.53 | 44.0 | 3.06e-01 | 95.7% | 55.9% |
| 4022722 | 2492.1.1.50 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › SsdA_C | 0.52 | 39.0 | 3.25e-01 | 80.4% | 91.2% |
| 3366088 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.52 | 39.0 | 2.79e-01 | 81.5% | 53.2% |
| 5019929 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.52 | 36.0 | 2.58e-01 | 72.8% | 88.9% |
| 3385473 | 3747.1.1.2 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C | 0.51 | 39.0 | 3.78e-01 | 95.7% | 71.8% |
D2
high
residues 163-266
Domain cluster:
rep: hypothetical_protein_pqer_cds_54__YP_009482745__Pandoravirus_quercus__2107709__D191-289
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1x51A01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.55 | 37.0 | 3.37e-01 | 70.2% | 71.3% |
| 3hhjB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 37.0 | 3.43e-01 | 70.2% | 71.8% |
| 4kl0A00 | 3.90.245.10 | Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like | 0.52 | 39.0 | 2.81e-01 | 83.7% | 50.0% |
| 2azwA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 38.0 | 3.43e-01 | 79.8% | 74.7% |
| 3bm4A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.50 | 36.0 | 2.95e-01 | 75.0% | 56.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3514244 | 221.4.1.18 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDT9_N | 0.57 | 40.0 | 3.16e-01 | 73.1% | 58.3% |
| 5083335 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.57 | 43.0 | 3.07e-01 | 81.7% | 83.2% |
| 3888855 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.51 | 38.0 | 3.50e-01 | 77.9% | 70.4% |
| 4646191 | 221.4.1.5 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › Hexose_dehydrat | 0.51 | 35.0 | 2.76e-01 | 71.2% | 46.1% |