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hypothetical_protein_pmac_cds_74

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_74__YP_009480758__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009480758 ↗
Protein ID:
hypothetical_protein_pmac_cds_74
Kingdom:
euk

Quality

66.2 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-186
PDB
Domain cluster: rep: F-box_domain_containing_protein__YP_009480767__Pandoravirus_macleodensis__2107707__D109-271
D2 medium residues 187-312_353-372
PDB
D3 medium residues 373-433
PDB
D4 medium residues 434-600
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_117__YP_009429960__Pandoravirus_salinus__1349410__D213-383
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5eidA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.61 40.0 4.66e-01 93.4% 89.4%
3t8kA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.52 37.0 3.62e-01 88.0% 66.8%
4rdbA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 3.59e-01 71.9% 74.5%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3254820 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.72 34.0 3.77e-01 95.8% 54.8%
3186674 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.59 39.0 4.11e-01 96.4% 73.3%
3475186 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.58 41.0 3.92e-01 94.6% 63.2%
3424602 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.54 37.0 3.96e-01 96.4% 82.9%
3358122 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.52 38.0 4.13e-01 96.4% 89.3%
D5 medium residues 601-698
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ceiA05 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.66 47.0 3.93e-01 73.5% 52.5%
5pg1A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.59 41.0 3.92e-01 71.4% 82.6%
5ulcX00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.59 40.0 3.75e-01 70.4% 80.3%
3deoA02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.58 47.0 4.04e-01 84.7% 65.1%
3ezxA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.57 40.0 4.20e-01 82.7% 82.6%
4n4gA01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.57 39.0 3.76e-01 70.4% 85.6%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.56 39.0 3.92e-01 81.6% 70.0%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 43.0 3.75e-01 84.7% 56.2%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.54 48.0 3.21e-01 100.0% 59.1%
6kmjA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.54 43.0 4.10e-01 83.7% 83.9%
1exzB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 40.0 3.56e-01 78.6% 61.4%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 39.0 3.56e-01 76.5% 60.0%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.53 36.0 3.35e-01 75.5% 54.8%
1t7pA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.53 41.0 3.56e-01 84.7% 81.5%
3iu6A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.53 45.0 3.98e-01 93.9% 76.9%
2fji102 1.10.357.70 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Exocyst complex component Sec6, C-terminal domain 0.52 45.0 3.69e-01 98.0% 50.0%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 42.0 3.97e-01 85.7% 81.0%
3iu5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 42.0 4.00e-01 85.7% 81.6%
6btdA00 3.40.225.10 Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain 0.51 37.0 2.95e-01 81.6% 36.9%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3684480 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 47.0 4.43e-01 82.7% 57.4%
3683778 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.70 47.0 4.60e-01 84.7% 63.8%
3693145 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.68 63.0 4.78e-01 100.0% 49.3%
3455413 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.62 42.0 3.89e-01 70.4% 80.0%
4021155 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.62 52.0 3.47e-01 91.8% 49.0%
3783025 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.61 42.0 3.96e-01 71.4% 89.2%
3422162 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.60 43.0 3.62e-01 74.5% 61.8%
3904779 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.60 43.0 4.20e-01 90.8% 66.4%
4997249 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.60 42.0 4.48e-01 82.7% 83.5%
2624828 529.1.1.1 ↗ few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › ANATO 0.60 38.0 4.18e-01 93.9% 80.5%
3471324 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 43.0 2.89e-01 91.8% 19.5%
3668553 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.59 42.0 3.93e-01 73.5% 87.5%
3456067 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.59 42.0 3.96e-01 74.5% 83.3%
4027317 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 49.0 3.28e-01 90.8% 35.0%
3400703 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.57 39.0 3.54e-01 71.4% 71.9%
3628708 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.55 44.0 3.83e-01 86.7% 65.3%
2141380 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.55 42.0 3.23e-01 81.6% 52.3%
3622367 3748.1.1.4 ↗ extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › RPN11_C 0.55 39.0 3.81e-01 73.5% 97.1%
3393573 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.54 42.0 3.31e-01 83.7% 55.2%
3189568 109.4.1.40 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › V-ATPase_H_N,V-ATPase_H_C 0.54 47.0 3.02e-01 98.0% 43.2%
3499941 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.54 42.0 3.87e-01 84.7% 73.1%
3493368 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.54 42.0 3.88e-01 84.7% 73.1%
3514360 109.4.1.914 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Ints3_C 0.54 45.0 2.98e-01 92.9% 26.4%
4666572 3758.1.1.101 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › PF29650 0.54 43.0 3.09e-01 86.7% 96.9%
3197503 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.53 43.0 3.83e-01 85.7% 69.6%
3787056 611.1.1.1 ↗ alpha bundles › N-cbl like › Transferrin receptor ectodomain, C-terminal domain › Transferrin receptor ectodomain, C-terminal domain › TFR_dimer 0.53 38.0 3.25e-01 75.5% 78.8%
3401392 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.53 42.0 3.88e-01 86.7% 75.4%
3518513 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.52 42.0 3.74e-01 84.7% 68.9%
4026160 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 43.0 2.59e-01 88.8% 21.0%
3533426 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.52 42.0 3.66e-01 86.7% 76.0%
4995580 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.52 44.0 3.29e-01 99.0% 96.3%
3166830 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.52 42.0 3.82e-01 86.7% 72.3%
3931890 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.52 41.0 3.68e-01 82.7% 70.8%
3622303 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.52 39.0 3.65e-01 80.6% 74.4%
3992079 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.51 41.0 3.61e-01 85.7% 64.8%
3396544 109.4.1.365 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RTTN_N 0.51 46.0 2.54e-01 99.0% 32.7%
3503440 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.51 40.0 3.80e-01 83.7% 80.0%
3806304 633.22.1.0 ↗ alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) 0.51 41.0 3.39e-01 86.7% 58.3%
3167164 633.1.1.1 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.50 42.0 3.74e-01 90.8% 68.6%
3484317 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.50 41.0 3.70e-01 86.7% 73.1%
5068760 2003.1.5.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.50 36.0 2.43e-01 73.5% 78.8%