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hypothetical_protein_pmac_cds_761

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_761__YP_009481445__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481445 ↗
Protein ID:
hypothetical_protein_pmac_cds_761
Kingdom:
euk

Quality

74.3 mean pLDDT

Taxonomy

TaxID: 2107707

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-137
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.72 51.0 5.08e-01 74.1% 85.5%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.70 55.0 5.73e-01 85.2% 100.0%
3dc4A00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.69 53.0 3.68e-01 84.0% 41.2%
4d05A01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.67 49.0 5.06e-01 76.5% 86.8%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.67 45.0 4.65e-01 70.4% 87.0%
3l2pA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.66 49.0 5.13e-01 79.0% 91.5%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 43.0 4.77e-01 72.8% 94.9%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.61 52.0 4.00e-01 96.3% 93.4%
3p0jA03 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.61 45.0 4.27e-01 77.8% 66.3%
4dguA01 2.60.40.2680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 49.0 4.45e-01 88.9% 92.0%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 43.0 3.62e-01 79.0% 61.7%
1dofA01 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.57 48.0 3.40e-01 90.1% 93.0%
4flnA02 3.20.190.20 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › 0.57 44.0 3.66e-01 85.2% 72.4%
2ogaA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 45.0 3.99e-01 87.7% 99.2%
3g16B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.42e-01 77.8% 62.5%
3b8mC02 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 40.0 3.67e-01 74.1% 71.2%
6wngA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.56 46.0 3.19e-01 90.1% 90.8%
6a5gA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.47e-01 77.8% 80.1%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.54e-01 79.0% 78.9%
3rgaA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.37e-01 79.0% 77.7%
1oeyL00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 40.0 3.81e-01 77.8% 65.3%
3wkmB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 40.0 3.91e-01 81.5% 69.1%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.62e-01 80.2% 77.5%
5h4eA01 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.55 42.0 3.10e-01 85.2% 61.5%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.43e-01 79.0% 65.9%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.45e-01 80.2% 78.2%
2gxfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.56e-01 80.2% 80.5%
3f7sA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.37e-01 80.2% 71.8%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.32e-01 84.0% 45.1%
2felA00 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.53 46.0 3.13e-01 100.0% 62.0%
3gzbA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.19e-01 79.0% 68.2%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.29e-01 77.8% 72.9%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.47e-01 80.2% 84.2%
4bgpA01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.52 38.0 3.37e-01 80.2% 64.6%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.51 29.0 3.25e-01 76.5% 73.7%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.34e-01 84.0% 72.5%
1auwA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.51 44.0 3.29e-01 100.0% 79.8%
1w97L02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.51 35.0 3.59e-01 71.6% 77.3%
3nftA00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.51 41.0 2.94e-01 91.4% 79.0%
1c7hA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.40e-01 82.7% 78.0%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.22e-01 79.0% 72.3%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.51e-01 84.0% 79.5%
1mgpA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 37.0 3.02e-01 79.0% 88.4%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2496895 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 58.0 5.49e-01 87.7% 85.6%
3807842 219.1.1.81 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY-3_4_CD 0.68 54.0 3.77e-01 88.9% 37.1%
5066729 632.3.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.63 49.0 4.73e-01 90.1% 74.4%
3739921 1015.1.1.1 alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › INSIG 0.61 53.0 4.13e-01 100.0% 95.3%
3672413 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 42.0 4.12e-01 75.3% 65.6%
2632036 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.61 44.0 3.68e-01 76.5% 74.6%
3244833 3914.1.1.2 alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.59 45.0 2.61e-01 80.2% 58.0%
3172253 2004.1.1.212 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Microtub_bd 0.59 47.0 3.10e-01 91.4% 36.9%
3797423 3226.1.1.0 alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA 0.59 52.0 3.22e-01 100.0% 70.9%
2329883 602.1.1.1 alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.58 49.0 3.45e-01 90.1% 97.5%
3960457 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 43.0 3.48e-01 79.0% 68.4%
3490042 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 42.0 3.95e-01 77.8% 69.0%
3953277 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.57 42.0 3.50e-01 79.0% 73.1%
3486197 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 41.0 3.99e-01 76.5% 74.4%
4441223 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.57 40.0 3.28e-01 74.1% 70.0%
3439460 10.12.1.101 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC, Cupin_8 0.56 41.0 2.75e-01 80.2% 54.0%
4338987 602.1.1.1 alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 0.54 47.0 3.39e-01 100.0% 87.5%
5059048 243.1.1.13 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.54 40.0 3.51e-01 80.2% 82.9%
2410469 243.1.1.16 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › AtzH-like 0.53 40.0 3.46e-01 80.2% 89.2%
4928815 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 37.0 4.01e-01 74.1% 96.9%
4339156 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.53 39.0 3.27e-01 80.2% 77.3%
3939757 10.12.1.9 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC 0.53 39.0 2.73e-01 82.7% 61.5%
3423775 601.16.1.8 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › DUF1218 0.53 43.0 3.52e-01 90.1% 63.2%
4029803 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 36.0 3.08e-01 72.8% 60.0%
3307679 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.52 38.0 3.19e-01 77.8% 82.1%
3829832 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.52 39.0 3.62e-01 84.0% 67.3%
4880604 4964.1.1.1 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A 0.51 38.0 3.24e-01 96.3% 45.8%
5049161 177.1.1.0 alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease 0.51 47.0 3.42e-01 100.0% 60.5%
2605239 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.51 36.0 3.25e-01 75.3% 77.5%
4981878 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 35.0 3.71e-01 76.5% 85.7%
D3 high residues 259-312
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 56.0 4.59e-01 83.3% 54.9%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.72 62.0 5.10e-01 98.1% 78.2%
4pq0A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 49.0 4.13e-01 79.6% 50.5%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 49.0 4.10e-01 83.3% 64.6%
2g5fB00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.63 49.0 2.99e-01 90.7% 79.8%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.63 54.0 4.14e-01 98.1% 97.7%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.60 49.0 3.00e-01 88.9% 67.6%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.59 47.0 3.78e-01 90.7% 71.9%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.59 50.0 3.23e-01 98.1% 93.0%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 41.0 3.34e-01 79.6% 91.8%
1xmxA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.57 41.0 3.11e-01 79.6% 66.4%
2ebmA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.57 44.0 3.34e-01 85.2% 64.1%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.55 43.0 3.23e-01 87.0% 98.6%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 37.0 3.12e-01 74.1% 87.6%
1kvkA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.54 44.0 3.33e-01 98.1% 98.0%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.53 45.0 3.20e-01 96.3% 57.4%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 45.0 3.90e-01 94.4% 89.3%
7z2bK01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.53 45.0 2.87e-01 100.0% 72.9%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 41.0 3.90e-01 92.6% 93.9%
1u02A02 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.51 40.0 3.63e-01 87.0% 89.5%
3cedA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.50 40.0 3.39e-01 92.6% 76.5%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3468148 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.77 68.0 4.58e-01 98.1% 28.7%
3636285 220.1.1.201 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.76 53.0 5.02e-01 74.1% 98.5%
3427234 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.75 66.0 4.22e-01 98.1% 23.7%
4988089 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.71 56.0 3.85e-01 87.0% 85.3%
4063575 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.70 53.0 4.19e-01 83.3% 53.0%
4975080 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.69 55.0 3.81e-01 88.9% 80.5%
2442362 1021.1.1.2 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD 0.68 46.0 4.38e-01 72.2% 60.3%
5018197 3487.1.1.1 a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › M1E1E6-like 0.66 50.0 3.95e-01 83.3% 86.1%
4803898 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 43.0 3.80e-01 96.3% 46.3%
5003416 3487.1.1.0 a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 0.65 49.0 3.89e-01 83.3% 86.8%
4308615 2484.1.1.40 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.64 51.0 3.85e-01 88.9% 66.7%
None 0.59 45.0 2.57e-01 87.0% 17.8%
3538687 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 49.0 4.09e-01 100.0% 92.4%
4321703 304.8.1.5 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.58 41.0 3.46e-01 74.1% 85.3%
4319369 304.8.1.1 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C 0.58 41.0 3.52e-01 72.2% 91.1%
4945089 3487.1.1.0 a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 0.58 45.0 3.78e-01 94.4% 78.2%
3909234 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.58 48.0 3.92e-01 100.0% 90.4%
3296049 4121.1.1.2 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.56 41.0 2.89e-01 85.2% 58.9%
3894260 5.1.4.220 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.56 47.0 2.92e-01 98.1% 91.0%
5038823 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.54 41.0 3.76e-01 83.3% 92.0%
None 0.53 39.0 2.99e-01 87.0% 83.9%
3713772 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.53 41.0 3.65e-01 85.2% 93.7%
3566243 2484.1.1.239 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, PF27046, PF27073 0.52 45.0 2.65e-01 100.0% 29.7%