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hypothetical_protein_pmac_cds_765

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_765__YP_009481449__Pandoravirus_macleodensis__2107707

Identity

Accession:: YP_009481449 ↗
Protein ID:: hypothetical_protein_pmac_cds_765
Kingdom:: euk

Quality

79.4 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 242-370

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ro5A01	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.58	41.0	3.61e-01	72.1%	71.7%
1q2yA00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.55	39.0	3.78e-01	71.3%	70.7%
2aj6A00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.53	37.0	3.87e-01	71.3%	94.2%
3mgdB00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.53	37.0	3.52e-01	71.3%	75.7%
1t3qC03	3.30.390.50	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain	0.53	37.0	3.97e-01	72.1%	83.8%
1e3dB00	1.10.645.10	Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B	0.52	36.0	2.37e-01	100.0%	16.8%
2k5tA00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.52	35.0	3.59e-01	71.3%	70.3%
1rm6B02	3.30.390.50	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain	0.52	35.0	3.82e-01	71.3%	84.1%
3f8kA00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.51	35.0	3.57e-01	71.3%	69.5%
1mrzB02	2.40.30.30	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like	0.51	32.0	3.45e-01	72.1%	73.2%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5057532	101.1.2.893 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF2226	0.71	38.0	2.90e-01	100.0%	24.0%
5023708	244.4.1.0 ↗	a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit	0.68	30.0	4.18e-01	89.1%	83.1%
3390600	244.3.1.0 ↗	a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU	0.65	35.0	4.48e-01	89.9%	90.7%
3934099	4099.1.1.0 ↗	a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like	0.62	30.0	3.56e-01	90.7%	65.6%
3584364	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.58	25.0	3.67e-01	93.8%	100.0%
3795223	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.57	26.0	3.15e-01	95.3%	62.4%
4962033	213.1.1.53 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_6	0.55	39.0	3.40e-01	72.1%	56.8%
4584323	3604.1.1.1 ↗	a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion	0.54	26.0	3.75e-01	88.4%	100.0%
4969490	2484.1.1.21 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG	0.53	36.0	4.16e-01	85.3%	98.9%
5079013	213.1.1.1 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1	0.52	36.0	3.25e-01	71.3%	67.2%
3265309	4026.1.1.0 ↗	a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145)	0.52	36.0	3.46e-01	96.1%	62.5%
5059335	244.3.1.3 ↗	a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C	0.52	36.0	3.88e-01	72.1%	84.5%
5068879	2484.1.1.21 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG	0.52	36.0	4.00e-01	87.6%	91.0%
5070879	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.52	35.0	4.10e-01	87.6%	98.9%
3251443	4026.1.1.0 ↗	a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145)	0.51	34.0	3.52e-01	96.1%	70.4%
4305702	3518.1.1.1 ↗	a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind	0.51	31.0	3.86e-01	92.2%	98.8%
4214517	3518.1.1.1 ↗	a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind	0.51	33.0	3.93e-01	95.3%	98.8%
2756455	9.11.1.0 ↗	beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like	0.51	33.0	3.94e-01	92.2%	96.6%

D2 high residues 371-477

PDB

Domain cluster: rep: hypothetical_protein_TW95_gp1179__YP_009120148__Pandoravirus_inopinatum__1605721__D70-169

D3 medium residues 15-134

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3cu4A00	1.10.760.10	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain	0.57	30.0	3.57e-01	98.3%	74.7%
3hgkE00	1.20.1280.110	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.56	32.0	3.78e-01	95.0%	84.4%
1rx0C01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.52	38.0	3.85e-01	100.0%	75.6%
1jm6B02	1.20.140.20	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Alpha-ketoacid/pyruvate dehydrogenase kinase, N-terminal domain	0.51	43.0	3.94e-01	90.8%	80.3%
3abbA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.51	43.0	3.10e-01	93.3%	64.5%
1sj7C00	1.20.1420.10	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain	0.50	34.0	3.12e-01	70.0%	97.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3925454	650.1.1.1 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ	0.61	31.0	3.56e-01	91.7%	64.7%
4015058	650.1.1.0 ↗	alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain	0.52	28.0	3.29e-01	78.3%	76.2%
3239997	4156.1.1.2 ↗	alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C	0.51	37.0	3.12e-01	75.0%	98.6%
4996540	181.1.1.1 ↗	alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N	0.50	32.0	3.61e-01	98.3%	89.4%

D4 medium residues 135-241

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4m70I00	1.20.5.4130	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.53	42.0	4.24e-01	94.4%	84.3%
2c5zA00	1.10.1740.100	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain	0.53	34.0	3.64e-01	98.1%	75.3%
3s64A00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.51	28.0	3.20e-01	94.4%	69.1%