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hypothetical_protein_pmac_cds_768
Euk-VirPandoravirus_macleodensis
hypothetical_protein_pmac_cds_768__YP_009481452__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009481452 ↗
- Protein ID:
- hypothetical_protein_pmac_cds_768
- Kingdom:
- euk
Quality
61.4
mean pLDDT
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 595-700
D2
medium
residues 65-174
D3
medium
residues 175-235
D4
medium
residues 236-304
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kpsB00 | 1.25.40.200 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ran-GTPase activating protein 1, C-terminal domain | 0.70 | 61.0 | 4.74e-01 | 100.0% | 87.2% |
| 3w2zA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.62 | 47.0 | 3.50e-01 | 82.6% | 92.1% |
| 1d8cA03 | 1.20.1220.12 | Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III | 0.60 | 47.0 | 3.80e-01 | 85.5% | 52.6% |
| 1y6xA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.60 | 46.0 | 4.33e-01 | 85.5% | 89.7% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.58 | 35.0 | 2.98e-01 | 72.5% | 39.1% |
| 3m3mA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 48.0 | 4.12e-01 | 97.1% | 94.0% |
| 2k19A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.56 | 40.0 | 3.63e-01 | 76.8% | 94.9% |
| 2cwyA00 | 1.10.3450.10 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like | 0.55 | 42.0 | 3.94e-01 | 88.4% | 95.7% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 35.0 | 3.63e-01 | 78.3% | 69.7% |
| 1axdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 44.0 | 3.77e-01 | 100.0% | 80.5% |
| 4ielA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 44.0 | 3.81e-01 | 98.6% | 93.1% |
| 4ivfA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 45.0 | 3.88e-01 | 100.0% | 95.7% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.51 | 40.0 | 3.52e-01 | 87.0% | 90.8% |
| 2fgeA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 46.0 | 3.13e-01 | 100.0% | 78.8% |
| 4gf0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 41.0 | 3.66e-01 | 98.6% | 87.6% |
| 4l8eA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 40.0 | 3.56e-01 | 92.8% | 77.3% |
| 1hs7A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 40.0 | 3.59e-01 | 88.4% | 82.5% |
| 1ng6A02 | 1.10.10.410 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.50 | 37.0 | 4.01e-01 | 87.0% | 100.0% |
| 1n2aA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.50 | 42.0 | 3.74e-01 | 100.0% | 83.0% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3912246 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.59 | 40.0 | 3.47e-01 | 72.5% | 73.9% |
| 3574221 | 186.2.1.1 ↗ | alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box | 0.56 | 41.0 | 3.43e-01 | 88.4% | 41.5% |
| 3521616 | 109.1.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C | 0.52 | 42.0 | 3.43e-01 | 100.0% | 65.6% |
D5
medium
residues 329-415
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xvxA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.64 | 54.0 | 5.02e-01 | 93.1% | 87.4% |
| 4a64A02 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.62 | 54.0 | 4.93e-01 | 100.0% | 82.9% |
| 3w3uA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.58 | 51.0 | 2.93e-01 | 100.0% | 21.8% |
| 1bc0A03 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.57 | 45.0 | 4.54e-01 | 95.4% | 87.2% |
| 4f5cA04 | 1.25.50.20 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › | 0.56 | 48.0 | 3.31e-01 | 97.7% | 26.2% |
| 5bz1A00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.56 | 44.0 | 3.00e-01 | 98.9% | 20.8% |
| 2r7rA05 | 1.10.357.80 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.55 | 45.0 | 3.71e-01 | 93.1% | 89.8% |
| 2fupA00 | 1.20.58.300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like | 0.54 | 45.0 | 4.05e-01 | 94.3% | 88.2% |
| 6p7vD00 | 3.30.710.10 | Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A | 0.53 | 41.0 | 3.76e-01 | 92.0% | 60.3% |
| 3agrA01 | 3.30.420.530 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 45.0 | 3.44e-01 | 98.9% | 70.9% |
| 3dwlG00 | 1.25.40.190 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Actin-related protein 2/3 complex subunit 5 | 0.53 | 43.0 | 4.00e-01 | 97.7% | 70.2% |
| 3n2oA03 | 1.20.58.930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 40.0 | 3.92e-01 | 82.8% | 91.7% |
| 4i1eA03 | 1.25.10.30 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › IP3 receptor type 1 binding core, RIH domain | 0.52 | 45.0 | 3.90e-01 | 98.9% | 97.8% |
| 6ks6q01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.52 | 39.0 | 2.77e-01 | 80.5% | 64.1% |
| 1u89A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 39.0 | 3.41e-01 | 83.9% | 65.5% |
| 1h97A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 38.0 | 3.26e-01 | 85.1% | 48.3% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5074457 | 1030.1.1.0 ↗ | alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 | 0.61 | 46.0 | 4.43e-01 | 82.8% | 95.2% |
| 3314808 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 51.0 | 4.33e-01 | 98.9% | 54.7% |
| 3506889 | 109.4.1.79 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Bystin | 0.60 | 48.0 | 3.39e-01 | 98.9% | 27.1% |
| 3630004 | 176.1.1.1 ↗ | alpha arrays › Annexin › Annexin › Annexin › Annexin | 0.60 | 46.0 | 4.83e-01 | 92.0% | 96.0% |
| 3641632 | 109.4.1.496 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec5 | 0.60 | 51.0 | 3.66e-01 | 98.9% | 52.3% |
| 3460111 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.59 | 46.0 | 3.15e-01 | 86.2% | 51.5% |
| 3934803 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 48.0 | 3.38e-01 | 97.7% | 26.7% |
| 4949690 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 51.0 | 3.90e-01 | 100.0% | 56.2% |
| 3832974 | 109.4.1.1963 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30979 | 0.58 | 40.0 | 3.02e-01 | 86.2% | 28.0% |
| 3207460 | 109.4.1.79 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Bystin | 0.57 | 47.0 | 3.22e-01 | 100.0% | 23.8% |
| 3459724 | 604.1.1.102 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF8324 | 0.56 | 42.0 | 3.90e-01 | 80.5% | 84.3% |
| 3598930 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 47.0 | 4.07e-01 | 97.7% | 57.2% |
| 3822 | 604.4.1.1 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP › AHSP | 0.56 | 42.0 | 4.15e-01 | 78.2% | 82.2% |
| 3457040 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.56 | 46.0 | 3.80e-01 | 100.0% | 49.1% |
| 4326722 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.53 | 40.0 | 3.30e-01 | 85.1% | 90.0% |
| 3787954 | 109.12.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain of Ku80 › C-terminal domain of Ku80 › MAS20 | 0.53 | 40.0 | 3.47e-01 | 100.0% | 51.4% |
| 3257997 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 43.0 | 4.05e-01 | 97.7% | 84.5% |
D6
medium
residues 416-507_521-594