←Back to structures

hypothetical_protein_pmac_cds_800

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_800__YP_009481484__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481484 ↗
Protein ID:
hypothetical_protein_pmac_cds_800
Kingdom:
euk

Quality

50.4 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-109_129-176
PDB
Domain cluster: rep: IMGVR_UViG_3300000568_000096-3300000568-Draft_1006303631__D8-117
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cs1A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 36.0 3.99e-01 79.7% 67.9%
1s4kA00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.56 28.0 2.94e-01 99.2% 49.2%
1szsA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 38.0 3.54e-01 81.2% 54.5%
6kjcA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 49.0 3.51e-01 97.7% 91.8%
1eqzF00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.56 37.0 4.05e-01 82.7% 83.2%
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.55 41.0 4.04e-01 87.2% 71.7%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.55 47.0 3.41e-01 95.5% 52.7%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.54 39.0 4.24e-01 82.7% 92.5%
4pcwC00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 34.0 3.87e-01 85.0% 90.1%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.52 38.0 4.19e-01 89.5% 97.1%
2qndA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 31.0 3.76e-01 71.4% 96.2%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.52 41.0 4.12e-01 97.0% 82.6%
3a1sA02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 31.0 3.64e-01 88.7% 90.9%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.50 30.0 3.35e-01 88.0% 75.0%
1x9zA01 3.30.1540.20 Alpha Beta › 2-Layer Sandwich › formyl-coa transferase, domain 3 › MutL, C-terminal domain, dimerisation subdomain 0.50 28.0 3.20e-01 83.5% 74.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3535262 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.67 38.0 4.54e-01 87.2% 84.7%
3609451 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.63 34.0 4.12e-01 85.7% 81.2%
3234424 108.1.1.96 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.60 34.0 4.21e-01 87.2% 91.3%
3798418 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 34.0 4.19e-01 88.0% 91.3%
1901910 7524.1.1.1 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.53 40.0 3.29e-01 78.2% 81.0%
4982174 242.2.1.2 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.53 29.0 3.64e-01 94.0% 94.3%
4933638 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 36.0 3.55e-01 100.0% 65.0%
3648804 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 4.00e-01 90.2% 87.8%
D2 high residues 261-338
PDB