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hypothetical_protein_pmac_cds_823
Euk-VirPandoravirus_macleodensis
hypothetical_protein_pmac_cds_823__YP_009481507__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009481507 ↗
- Protein ID:
- hypothetical_protein_pmac_cds_823
- Kingdom:
- euk
Quality
55.7
mean pLDDT
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-83
D2
high
residues 131-225
Domain cluster:
rep: hypothetical_protein_pqer_cds_1104__YP_009483795__Pandoravirus_quercus__2107709__D75-181
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vq0A02 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.59 | 35.0 | 4.29e-01 | 80.0% | 98.2% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 42.0 | 3.82e-01 | 72.6% | 81.5% |
| 3u1nB01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.55 | 47.0 | 3.26e-01 | 94.7% | 58.5% |
| 1q5qH00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.55 | 39.0 | 3.08e-01 | 76.8% | 97.8% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.40e-01 | 72.6% | 73.6% |
| 5jrjA02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.54 | 27.0 | 3.32e-01 | 80.0% | 76.3% |
| 1dvoA00 | 1.10.1710.10 | Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain | 0.52 | 44.0 | 3.86e-01 | 95.8% | 75.7% |
| 1pjqA02 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.51 | 22.0 | 3.15e-01 | 80.0% | 100.0% |
| 4em2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 42.0 | 3.66e-01 | 92.6% | 82.7% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3254552 | 376.1.1.31 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_5 | 0.64 | 40.0 | 4.47e-01 | 75.8% | 84.3% |
| 4025349 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.60 | 36.0 | 3.26e-01 | 96.8% | 44.6% |
| 3172877 | 2003.1.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N | 0.59 | 40.0 | 3.11e-01 | 70.5% | 90.2% |
| 4964648 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.57 | 49.0 | 3.65e-01 | 93.7% | 86.8% |
| 4072945 | 80.1.1.1 ↗ | beta complex topology › HesB-like domain › HesB-like domain › HesB-like domain › Fe-S_biosyn | 0.53 | 37.0 | 3.71e-01 | 72.6% | 94.0% |
| 3812745 | 221.4.1.28 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › DUF7915 | 0.52 | 42.0 | 3.59e-01 | 89.5% | 99.4% |
| 3434819 | 601.1.1.91 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF1218 | 0.52 | 35.0 | 2.95e-01 | 72.6% | 41.9% |
| 3554865 | 316.1.1.25 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 | 0.52 | 38.0 | 3.01e-01 | 78.9% | 80.0% |
| 54735 | 4132.1.1.0 ↗ | alpha bundles › IpaD-like › IpaD-like › IpaD-like | 0.51 | 41.0 | 2.93e-01 | 86.3% | 45.1% |
| 3476904 | 601.23.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III | 0.51 | 41.0 | 2.79e-01 | 98.9% | 24.5% |
| 1422121 | 4132.1.1.1 ↗ | alpha bundles › IpaD-like › IpaD-like › IpaD-like › T3SS_TC | 0.51 | 41.0 | 3.16e-01 | 86.3% | 61.5% |
| 3528675 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.51 | 40.0 | 3.05e-01 | 86.3% | 83.0% |