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hypothetical_protein_pmac_cds_830
Euk-VirPandoravirus_macleodensis
hypothetical_protein_pmac_cds_830__YP_009481514__Pandoravirus_macleodensis__2107707
Identity
- Accession:
- YP_009481514 ↗
- Protein ID:
- hypothetical_protein_pmac_cds_830
- Kingdom:
- euk
Quality
53.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-141
D2
high
residues 202-292
D3
high
residues 372-466
Domain cluster:
rep: hypothetical_protein_pneo_cds_643__YP_009482253__Pandoravirus_neocaledonia__2107708__D95-188
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19178.6 best | DUF5860 | 113.4 | 1.60e-32 | 100.0% | 56.9% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cfeA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.63 | 49.0 | 4.38e-01 | 83.2% | 92.6% |
| 4d53A00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.60 | 50.0 | 4.50e-01 | 92.6% | 96.2% |
| 2w1jA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.59 | 50.0 | 3.98e-01 | 92.6% | 76.9% |
| 2w1kA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.59 | 54.0 | 4.14e-01 | 100.0% | 52.4% |
| 2cvoA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.59 | 38.0 | 3.18e-01 | 88.4% | 37.1% |
| 3d36B01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.58 | 46.0 | 3.87e-01 | 87.4% | 50.6% |
| 1zmaA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 45.0 | 4.26e-01 | 86.3% | 100.0% |
| 4ubtD00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.57 | 45.0 | 3.09e-01 | 87.4% | 76.3% |
| 4g2uA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.56 | 48.0 | 3.87e-01 | 100.0% | 80.0% |
| 5k9aA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.56 | 50.0 | 3.88e-01 | 100.0% | 50.2% |
| 3s3lA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.56 | 38.0 | 3.26e-01 | 70.5% | 100.0% |
| 4d70A00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.54 | 49.0 | 4.11e-01 | 100.0% | 65.0% |
| 2c7yA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 44.0 | 3.04e-01 | 94.7% | 98.2% |
| 3fn5B00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.54 | 47.0 | 4.00e-01 | 100.0% | 68.7% |
| 4wzuA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 45.0 | 3.09e-01 | 96.8% | 89.4% |
| 7wvzA01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 45.0 | 3.03e-01 | 98.9% | 73.7% |
| 4y4qA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.52 | 45.0 | 3.81e-01 | 100.0% | 81.6% |
| 5go5A00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.52 | 45.0 | 3.96e-01 | 100.0% | 88.2% |
| 3ihjA03 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 45.0 | 3.42e-01 | 98.9% | 83.3% |
| 1jw3A00 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.52 | 46.0 | 4.08e-01 | 100.0% | 71.4% |
| 8cuyA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 45.0 | 2.99e-01 | 100.0% | 72.6% |
| 1tedA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 42.0 | 3.62e-01 | 91.6% | 73.8% |
| 3vs8H00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 42.0 | 2.79e-01 | 91.6% | 28.9% |
| 4jaqA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 42.0 | 3.65e-01 | 91.6% | 75.2% |
| 4ux7A00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.50 | 43.0 | 3.47e-01 | 100.0% | 81.4% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3617194 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.69 | 57.0 | 5.19e-01 | 91.6% | 95.4% |
| 4027274 | 273.1.1.2 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C | 0.66 | 55.0 | 4.84e-01 | 92.6% | 97.9% |
| 3499933 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.62 | 51.0 | 4.66e-01 | 91.6% | 96.2% |
| 3589952 | 290.1.1.1 ↗ | beta barrels › Sortase › Sortase › Sortase › Sortase | 0.61 | 56.0 | 4.42e-01 | 100.0% | 61.1% |
| 3718069 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.59 | 53.0 | 4.51e-01 | 98.9% | 98.7% |
| 3376182 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.59 | 49.0 | 4.18e-01 | 88.4% | 57.3% |
| 3976466 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.59 | 47.0 | 4.04e-01 | 86.3% | 54.0% |
| 169822 | 290.1.1.1 ↗ | beta barrels › Sortase › Sortase › Sortase › Sortase | 0.59 | 54.0 | 4.14e-01 | 100.0% | 52.4% |
| 3607133 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.59 | 50.0 | 4.10e-01 | 93.7% | 100.0% |
| 3587540 | 290.1.1.1 ↗ | beta barrels › Sortase › Sortase › Sortase › Sortase | 0.58 | 52.0 | 4.35e-01 | 100.0% | 71.8% |
| 3273309 | 7581.1.1.2 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt | 0.57 | 41.0 | 3.24e-01 | 73.7% | 70.3% |
| 4947763 | 298.1.1.23 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Semialdhyde_dhC_1 | 0.57 | 37.0 | 3.14e-01 | 89.5% | 38.2% |
| 1842342 | 290.1.1.1 ↗ | beta barrels › Sortase › Sortase › Sortase › Sortase | 0.56 | 51.0 | 3.89e-01 | 100.0% | 50.7% |
| 2096156 | 4178.1.1.1 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 | 0.56 | 31.0 | 2.66e-01 | 85.3% | 31.2% |
| 3664751 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.55 | 43.0 | 4.30e-01 | 85.3% | 89.0% |
| 2129791 | 290.1.1.1 ↗ | beta barrels › Sortase › Sortase › Sortase › Sortase | 0.55 | 48.0 | 3.80e-01 | 100.0% | 72.5% |
| 5024134 | 290.1.1.1 ↗ | beta barrels › Sortase › Sortase › Sortase › Sortase | 0.55 | 49.0 | 4.33e-01 | 100.0% | 74.3% |
| 4001525 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.54 | 47.0 | 3.28e-01 | 100.0% | 39.7% |
| 3943786 | 7581.1.1.19 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N+Thiolase_C | 0.54 | 42.0 | 2.81e-01 | 86.3% | 84.4% |
| 3462526 | 2492.1.1.11 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 | 0.54 | 31.0 | 2.41e-01 | 92.6% | 25.7% |
| 3949253 | 872.4.1.1 ↗ | a+b two layers › Dodecin subunit-like › YdgH-like › YdgH-like › YdgH_BhsA-like | 0.53 | 40.0 | 4.17e-01 | 96.8% | 88.2% |
| 3998860 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.52 | 45.0 | 3.67e-01 | 97.9% | 79.5% |
| 3500824 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 35.0 | 2.45e-01 | 71.6% | 46.6% |
| 3075298 | 7581.1.1.7 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Ketoacyl-synt_C | 0.51 | 44.0 | 3.58e-01 | 96.8% | 68.5% |
| 5058472 | 2004.1.1.84 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TsaE | 0.51 | 41.0 | 3.51e-01 | 87.4% | 93.3% |
| 3997566 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.50 | 44.0 | 3.61e-01 | 98.9% | 78.9% |
| 3945562 | 1.1.7.111 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › T6SS_TssF | 0.50 | 38.0 | 3.54e-01 | 78.9% | 77.4% |
D4
high
residues 476-576
Domain cluster:
rep: hypothetical_protein_TW95_gp1137__YP_009120106__Pandoravirus_inopinatum__1605721__D229-297
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19178.6 best | DUF5860 | 70.5 | 2.40e-19 | 60.4% | 35.9% |