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hypothetical_protein_pmac_cds_851

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_851__YP_009481535__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481535 ↗
Protein ID:
hypothetical_protein_pmac_cds_851
Kingdom:
euk

Quality

70.8 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 545-592
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hraA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.72 60.0 4.06e-01 100.0% 32.7%
4eqyA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.62 46.0 4.14e-01 83.3% 75.7%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 4.30e-01 81.2% 95.8%
2wiyA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.59 45.0 2.78e-01 93.8% 71.8%
1bedA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 43.0 2.95e-01 81.2% 70.7%
3mkqB00 1.25.40.470 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 46.0 3.31e-01 100.0% 27.7%
3tu3B02 3.40.1090.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain 0.58 41.0 2.61e-01 77.1% 18.0%
3nqxA02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.58 49.0 3.52e-01 97.9% 39.7%
2mbgA01 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.56 48.0 3.21e-01 100.0% 71.4%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.56 40.0 3.47e-01 83.3% 75.6%
2yviA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.55 41.0 3.51e-01 87.5% 66.3%
1wxqA02 1.10.8.470 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 38.0 3.20e-01 77.1% 66.7%
2p5kA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.87e-01 95.8% 96.8%
2pmyA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 41.0 3.67e-01 91.7% 67.1%
4p3yB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 39.0 2.69e-01 83.3% 66.9%
4z7xB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 44.0 2.86e-01 95.8% 49.0%
7dkaA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 39.0 2.71e-01 91.7% 66.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3711276 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.74 62.0 4.00e-01 100.0% 24.6%
3261630 109.3.1.165 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4, Ank_5 0.72 61.0 3.66e-01 100.0% 17.2%
3600083 4015.1.1.0 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins 0.70 59.0 3.82e-01 100.0% 24.1%
3733315 109.3.1.166 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.70 57.0 3.85e-01 100.0% 23.7%
3373475 185.1.1.2 ↗ alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › LTP_2 0.63 51.0 4.35e-01 100.0% 72.2%
5042147 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.59 45.0 4.05e-01 95.8% 75.0%
5042947 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.58 41.0 4.15e-01 85.4% 90.0%
4963466 101.1.1.368 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.57 45.0 4.67e-01 87.5% 100.0%
3771567 110.1.1.1 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death 0.56 45.0 3.52e-01 91.7% 46.4%
4567840 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.56 41.0 3.96e-01 79.2% 76.4%
3241028 101.1.2.649 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28730 0.55 39.0 3.33e-01 77.1% 51.8%
3609311 7575.1.1.0 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.55 45.0 3.11e-01 100.0% 30.3%
3230755 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 39.0 3.56e-01 83.3% 73.3%
4429123 2485.1.1.42 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_5 0.53 38.0 2.63e-01 81.2% 43.6%
4471924 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 39.0 3.77e-01 87.5% 92.7%
4552196 2485.1.1.42 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_5 0.50 42.0 2.80e-01 100.0% 48.4%
D2 medium residues 258-351
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dcqA02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.63 55.0 4.62e-01 96.8% 58.6%
2yvyA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.61 44.0 4.04e-01 76.6% 90.4%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.52 30.0 2.96e-01 87.2% 48.6%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3260809 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.72 66.0 5.82e-01 100.0% 98.5%
3254410 109.3.1.10 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_4 0.71 58.0 5.29e-01 100.0% 67.2%
3678251 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.68 61.0 5.68e-01 100.0% 80.9%
3802116 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.53 45.0 3.50e-01 100.0% 44.2%
3689023 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.52 45.0 3.24e-01 100.0% 64.3%
3384110 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.51 43.0 3.72e-01 100.0% 60.6%
3827580 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.51 44.0 4.13e-01 100.0% 87.5%
3813988 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.51 43.0 3.22e-01 100.0% 44.6%
3775676 1065.1.1.7 ↗ alpha bundles › SPX domain › SPX domain › SPX domain › EPS8_2nd 0.50 43.0 3.65e-01 98.9% 66.5%
3299887 109.4.1.420 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.50 42.0 3.98e-01 96.8% 75.0%