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hypothetical_protein_pmac_cds_903

Euk-Vir

Pandoravirus_macleodensis

hypothetical_protein_pmac_cds_903__YP_009481587__Pandoravirus_macleodensis__2107707

Identity

Accession:
YP_009481587 ↗
Protein ID:
hypothetical_protein_pmac_cds_903
Kingdom:
euk

Quality

73.3 mean pLDDT

Taxonomy

Pandoravirus› Pandoravirus_macleodensis

TaxID: 2107707

Cluster

View cluster (31 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-91
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 62.0 5.82e-01 80.3% 69.9%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.77 60.0 5.16e-01 83.6% 60.6%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.77 54.0 5.32e-01 75.4% 74.6%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.76 51.0 3.76e-01 70.5% 29.5%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 58.0 5.56e-01 83.6% 74.6%
1n81A00 1.10.3030.10 Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 0.75 52.0 3.62e-01 73.8% 23.7%
2xokP00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.73 52.0 4.95e-01 77.0% 63.5%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.71 43.0 4.19e-01 80.3% 54.4%
3syvA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.71 53.0 3.56e-01 82.0% 22.4%
1rv2D04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.70 47.0 4.49e-01 98.4% 60.0%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.69 56.0 4.71e-01 90.2% 59.4%
2fonA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.67 51.0 4.07e-01 83.6% 40.3%
2jrmA00 1.10.10.620 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain 0.66 49.0 4.96e-01 85.2% 83.3%
2ixnA02 1.20.120.1150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphotyrosyl phosphate activator, C-terminal lid domain 0.63 39.0 3.24e-01 70.5% 34.6%
2kkmA01 1.20.1440.170 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like 0.61 45.0 3.65e-01 82.0% 68.0%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.60 45.0 3.10e-01 82.0% 28.3%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.60 42.0 4.00e-01 75.4% 78.4%
3mgdB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 40.0 3.05e-01 77.0% 76.3%
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.54 36.0 3.54e-01 70.5% 77.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3666814 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.79 53.0 5.52e-01 70.5% 76.4%
3623143 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.78 60.0 5.36e-01 82.0% 61.2%
3729229 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.75 68.0 4.32e-01 100.0% 78.9%
3580104 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 50.0 4.38e-01 86.9% 98.9%
3940302 109.54.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.62 50.0 3.94e-01 98.4% 50.7%
D2 high residues 106-177
PDB
D3 high residues 183-317
PDB
Domain cluster: rep: hypothetical_protein_psal_cds_357__YP_008437077__Pandoravirus_salinus__1349410__D224-353
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jkgB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 44.0 4.02e-01 74.8% 85.0%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 50.0 3.46e-01 90.4% 58.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010025 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.60 36.0 3.86e-01 88.1% 67.5%
3278526 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 41.0 4.18e-01 75.6% 100.0%
3626881 5084.5.1.33 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DNAJC11_beta-barrel 0.56 41.0 3.17e-01 74.8% 97.3%
3593382 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 48.0 3.41e-01 94.1% 89.6%
3383213 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 43.0 3.29e-01 82.2% 54.8%
3599435 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.55 42.0 3.04e-01 80.7% 57.9%
4011330 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 37.0 3.76e-01 70.4% 90.4%
4298303 243.1.1.92 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26366 0.54 37.0 3.87e-01 70.4% 97.6%
3402824 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.53 44.0 3.16e-01 89.6% 35.9%
4413985 5.1.4.42 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_4 0.53 44.0 3.27e-01 90.4% 56.7%
2545212 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.53 40.0 3.57e-01 78.5% 74.5%
3289399 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 36.0 3.70e-01 70.4% 96.8%
3277627 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 35.0 3.79e-01 70.4% 94.8%
4460572 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 36.0 3.71e-01 74.1% 90.0%
3448363 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 41.0 3.42e-01 85.9% 80.9%